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• Temporary Directories
  ...y been set, in which case it will be ignored. Check your job script(s) and shell initialization files like .bashrc and .bash_profile to make sure you do not
  2 KB (307 words) - 15:01, 19 July 2023
• BYOBU
  [[Category:Software]][[Category:Shell]]
  3 KB (313 words) - 19:50, 11 July 2022
• SCRON (Slurm Cron Jobs)
  ...s permission settings. Jobs handled by scrontab do not run in a full login shell, so if you have customized your .bashrc file you need to add: ..., NOT sbatch. You can list multiple commands separated by ;, and use other shell features, such as redirects. Also, any #SBATCH directives in executed scrip
  5 KB (839 words) - 18:34, 17 April 2024
• Tecplot 360 EX
  ...details. To run Tecplot under Xpra use the tecplot module and tecplot_gui shell wrapper. Example session with the default resource request:
  3 KB (337 words) - 14:56, 19 August 2022
• Neovim
  [[Category:Software]][[Category:Programming]][[Category:Shell]][[Category:Utility]]
  3 KB (327 words) - 20:24, 2 February 2024
• ECE
  Wrapper shell scripts for the following applications are available, so they can be called
  3 KB (360 words) - 21:39, 3 March 2023
• SEQuel
  ...etting 'Xmx' in the Java environment variable in your job script or in the shell. E.g. set
  3 KB (382 words) - 22:39, 21 August 2022
• Open OnDemand
  HiPerGator Shell Access: This link opens a terminal shell in your browser that allows access the HiPerGator
  7 KB (1,059 words) - 16:46, 5 May 2023
• ToFU2
  ...use the 'launch_tofu2' command in a [[Development_and_Testing|dev session shell]] or in a job script. E.g.
  3 KB (398 words) - 16:38, 22 August 2022
• ORCA
  ...antum chemistry with specific emphasis on spectroscopic properties of open-shell molecules. It features a wide variety of standard quantum chemical methods
  3 KB (399 words) - 14:03, 2 April 2024
• Storage
  ...y contain files important for setting up user shell environment and secure shell connections. Do not remove any .bash* files or the .ssh directory or you wi
  12 KB (2,046 words) - 15:26, 13 July 2023
• Sharing Within A Cluster
  ...but not any other users outside of the group add the following line to the shell initialization script <code>'~/.bashrc'</code> in each group member's home
  4 KB (682 words) - 15:25, 13 July 2023
• SLURM Commands
  An interactive SLURM session i.e. a shell prompt within a running job can be started with
  3 KB (547 words) - 16:09, 6 March 2024
• Applications FAQ
  or from R shell:
  4 KB (579 words) - 20:42, 16 October 2023
• Persistent Terminal Sessions
  ...to the command you want to issue to the screen. The commands with '$' are shell commands, whereas all 'Ctrl+a...' commands are issued inside a screen sessi
  4 KB (719 words) - 13:36, 2 January 2023
• Globus
  Copy the URL from the shell and visit that web page in a web browser on any computer. If you are not cu Paste the authorization code into the shell where you ran the "globus login --no-local-server" command, as a response t
  11 KB (1,849 words) - 14:14, 31 January 2024
• Cron
  {{Note|Cron environment does not inherit your shell environment. So, unless you use absolute paths to all executables (binaries
  4 KB (661 words) - 19:04, 27 February 2023
• SnpEff
  In SnpEff-4.x series the upstream project provides a shell script <code>'snpEff'</code>, which can be used to run the program without
  4 KB (562 words) - 15:19, 5 January 2023
• Samba Access
  To mount from the Linux shell prompt, install the cifs-utils package (yum or apt-get) and run
  5 KB (816 words) - 17:31, 31 August 2023
• HPG Computation
  ...don't always have to use the SLURM scheduler. When all you need is a quick shell session to run a command or two, write and/or test a job script, or compile
  5 KB (758 words) - 15:28, 16 May 2023
• Picard-tools
  Starting with picard/1.137 there is a convenient shell wrapper '<code>picard</code>', so you can use the following command:
  6 KB (882 words) - 15:25, 27 January 2023
• Jupyter Notebooks
  ...e the [[Open OnDemand| Open OnDemand]] for information on file management, shell access and other features available from Open OnDemand. ...d a terminal to run the commands below. You can use an ssh client, the OOD Shell Access or launch a Terminal within your Jupyter Server. The image on the ri
  18 KB (2,983 words) - 18:58, 23 March 2023
• Conda
  ...ng the path to the conda environment's 'bin' directory to the $PATH in the shell environment is sufficient for using them.
  16 KB (2,392 words) - 20:14, 16 April 2024
• New user training
  ** You cannot always use tab completion in the shell
  16 KB (2,450 words) - 15:00, 14 August 2023

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