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• C-wap
  |{{#vardefine:app|c-wap}} |{{#vardefine:url|https://github.com/CFSAN-Biostatistics/C-WAP}}
  2 KB (281 words) - 13:16, 15 August 2022
• NetCDF-C
  |{{#vardefine:app|netcdf-c}}
  2 KB (278 words) - 14:47, 19 August 2022
• NCBI C++ Toolkit
  NCBI C++ Toolkit provides free, portable, public domain libraries with no restrict
  3 KB (306 words) - 14:25, 19 August 2022

• File:2012-04-19-Parallel Processing-C Taylor.ppt (1.42 MB) - 16:10, 19 April 2012

Page text matches

• Category:Compiler
  ...n-us/intel-parallel-studio-xe Intel Compiler Suite] provides Fortran and C/C++ compilers and is preferred compiler option on hipergator. The [https://gcc.gnu.org GNU Compiler Suite] provides Fortran and C/C++ compilers.
  24 members (0 subcategories, 0 files) - 17:51, 27 September 2023
• Intel MPI
  mpicc ( C source) mpiCC (C++ source)
  3 KB (297 words) - 12:01, 26 August 2022
• SWIG
  ...the 'glue code' required for the above target languages to call into the C/C++ code. SWIG can also export its parse tree in the form of XML and Lisp s-e
  3 KB (414 words) - 20:04, 21 August 2022
• HiC-Pro
  ...ng dilution Hi-C, in situ Hi-C, DNase Hi-C, Micro-C, capture-C, capture Hi-C or HiChip data. ..., Heard E., Barillot E. HiC-Pro: An optimized and flexible pipeline for Hi-C processing. Genome Biology 2015, 16:259 doi:10.1186/s13059-015-0831-x
  3 KB (432 words) - 18:17, 15 August 2022
• Boost
  "Boost provides free peer-reviewed portable C++ source libraries. We emphasize libraries that work well with the C++ Standard Library. Boost libraries are intended to be widely useful, and u
  3 KB (350 words) - 13:06, 15 August 2022
• Xerces
  |{{#vardefine:url|http://xerces.apache.org/#xerces-c}} ...or parsing, generating, manipulating, and validating XML documents. Xerces-C++ is faithful to the XML 1.0 and 1.1 recommendations and many associated st
  3 KB (306 words) - 21:29, 6 December 2019
• LDhat
  ...n rates from population genetic data. The package is available either as C/C++ source code.
  2 KB (296 words) - 17:09, 10 June 2022
• GCC
  The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc+
  2 KB (251 words) - 16:55, 15 August 2022
• CryptoMiniSat
  ...ython interface provides a high-level yet efficient API to use most of the C++ interface with ease.
  3 KB (325 words) - 14:13, 15 August 2022
• Delft3D Configuration
  a) module load intel/2020.0.166 openmpi/4.1.5 netcdf-c/4.9.2 netcdf-f/4.6.1 metis/5.2.1 cmake/3.26.4 petsc/3.19.4 ...export NETCDF_CFLAGS="-I/apps/intel/2020.0.166/openmpi/4.1.5/netcdf-c/4.9.2/include\
  2 KB (310 words) - 14:05, 17 April 2024
• Federated Account Request
  Type: <code>ssh-keygen -t ed25519 -C "My HiPerGator Key"</code> C:\> ssh-keygen -t ed25519 -C "My HiPerGator Key"
  4 KB (634 words) - 17:53, 12 September 2023
• Amber Job Sample Scripts
  sander -O -i amber.in -o amber.log -p amber.prmtop -c amber.inpcrd mpiexec sander.MPI -O -i amber.in -o amber.log -p amber.prmtop -c amber.inpcrd
  1 KB (171 words) - 21:18, 5 December 2022
• Freesasa
  FreeSASA is a C library and C++ command line tool for calculating Solvent Accessible Surface Area (SASA) Simon Mitternacht (2016) FreeSASA: An open source C library for solvent accessible surface area calculations. F1000Research 5:1
  2 KB (276 words) - 16:49, 15 August 2022
• Fanc
  |{{#vardefine:url|https://fan-c.readthedocs.io/}} FAN-C provides a pipeline for analysing Hi-C data starting at mapped paired-end sequencing reads.
  2 KB (281 words) - 15:56, 22 March 2024
• Asaq
  ...possible tree topology. To run ASAQ it is necessary to have installed the C++ linear algebra library Armadillo ...//arma.sourceforge.net/armadillo_joss_2016.pdf Armadillo: a template-based C++ library for linear algebra]. Journal of Open Source Software, Vol. 1, pp.
  3 KB (374 words) - 15:10, 1 June 2022
• GNU Compiler Collection
  The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, Ada, and Go, as well as libraries for these languages (libs
  2 KB (298 words) - 20:44, 15 August 2022
• Doxygen
  annotated C++ sources, but it also supports other popular programming languages such as C, Objective-C, C#, PHP, Java, Python, IDL (Corba and
  3 KB (406 words) - 14:47, 15 August 2022
• Nvhpc
  ...GPU acceleration of HPC modeling and simulation applications with standard C++ and Fortran, OpenACC® directives, and CUDA®. GPU-accelerated math libra
  3 KB (334 words) - 17:24, 19 August 2022
• ProtExcluder
  ...e, G. D., Hunagel, D. E., Lei, J., Achawanantakun, R., Jiao, D., Lawrence, C. J., Ware, D., Shiu, S-H., Childs, K. L., Sun, Y., Jiang, N, Yandell, M. 20
  3 KB (329 words) - 21:22, 6 December 2019
• Juicer
  ...stq raw data files and command line tools for feature annotation on the Hi-C maps. The juicer pipeline submits jobs to the cluster and then exits. It ca
  3 KB (369 words) - 16:29, 15 October 2023
• Ngsremix
  The method is implemented as a C/C++ commandline program.
  2 KB (259 words) - 21:49, 28 February 2023
• Dlib
  ...ing machine learning algorithms and tools for creating complex software in C++ to solve real world problems. See http://dlib.net for the main project do
  2 KB (269 words) - 13:11, 4 May 2020
• Armadillo
  Armadillo is a high quality C++ linear algebra library, aiming towards a good balance between speed and e ...://arma.sourceforge.net/armadillo_nicta_2010.pdf Armadillo: An Open Source C++ Linear Algebra Library for Fast Prototyping and Computationally Intensive
  2 KB (269 words) - 14:33, 12 August 2022
• SALSA
  A tool to scaffold long read assemblies with Hi-C Ghurye, J., Pop, M., Koren, S., Bickhart, D., & Chin, C. S. (2017). Scaffolding of long read assemblies using long range contact in
  2 KB (269 words) - 20:11, 24 August 2022
• SUNDIALS
  ...marsh, P. N. Brown, K. E. Grant, S. L. Lee, R. Serban, D. E. Shumaker, and C. S. Woodward, "SUNDIALS: Suite of Nonlinear and Differential/Algebraic Equa * R. Serban and A. C. Hindmarsh, "CVODES: the Sensitivity-Enabled ODE Solver in SUNDIALS," Proce
  3 KB (364 words) - 15:25, 19 August 2022
• ImageMagick
  ...re (C), MagickWand (C), ChMagick (Ch), ImageMagickObject (COM+), Magick++ (C++), JMagick (Java), L-Magick (Lisp), Lua, NMagick (Neko/haXe), Magick.NET (
  3 KB (380 words) - 18:46, 15 August 2022
• C-wap
  |{{#vardefine:app|c-wap}} |{{#vardefine:url|https://github.com/CFSAN-Biostatistics/C-WAP}}
  2 KB (281 words) - 13:16, 15 August 2022
• GRACKLE
  ...ry for astrophysical simulations and models. Grackle has interfaces for C, C++, Fortran, and Python codes and provides:
  2 KB (294 words) - 17:18, 15 August 2022
• BERTopic
  BERTopic is a topic modeling technique that leverages transformers and c-TF-IDF to create dense clusters allowing for easily interpretable topics wh [https://zenodo.org/record/4719700 BERTopic: Leveraging BERT and c-TF-IDF to create easily interpretable topics.]
  2 KB (283 words) - 14:00, 27 May 2022
• Panaroo
  ...dair N, Ruis C, Weimann A, Horesh G, Lees JA, Gladstone RA, Lo S, Beaudoin C, Floto RA, Frost SDW, Corander J, Bentley SD, Parkhill J. 2020. Producing p
  2 KB (289 words) - 19:33, 13 June 2023
• Deepfri
  ...ek, T., Leman, J. K., Berenberg, D., Vatanen, T., Chandler, C., Taylor, B. C., Fisk, I. M., Vlamakis, H., Xavier, R. J., Knight, R., Cho, K., & Bonneau,
  2 KB (290 words) - 19:30, 10 March 2023
• Plinkseq
  PLINK/SEQ is an open-source C/C++ library for working with human genetic variation data. The specific focus
  2 KB (296 words) - 20:25, 12 August 2022
• HOOMD
  J. A. Anderson, C. D. Lorenz, and A. Travesset. General purpose molecular dynamics simulation ...D. Nguyen, J. A. Anderson, P. Liu, F. Spiga, J. A. Millan, D. C. Morse, S. C. Glotzer. Strong scaling of general-purpose molecular dynamics simulations
  5 KB (607 words) - 15:40, 6 June 2022
• NetCDF
  ...e that the Fortran module man not have all supporting binaries that netcdf-c module has.
  3 KB (402 words) - 14:56, 12 March 2024
• GSL
  The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. It is free software under the GNU General
  2 KB (300 words) - 17:27, 15 August 2022
• OpenCV
  ...des several hundreds of computer vision algorithms. Written in optimized C/C++, the library can take advantage of multi-core processing. Enabled with Op
  2 KB (283 words) - 21:31, 6 December 2019
• Quantisnp
  ...M., Mirza, G., Butler, H., Clouston, P., Basset, A.S., Seller, A., Holmes, C., and Ragoussis, J. QuantiSNP: an Objective Bayes Hidden-Markov Model to de
  2 KB (297 words) - 20:29, 12 August 2022
• GEOS
  ...te (JTS). As such, it aims to contain the complete functionality of JTS in C++. This includes all the ​OpenGIS Simple Features for SQL spatial predica
  3 KB (307 words) - 17:05, 15 August 2022
• DCMTK
  ...orage and worklist servers. DCMTK is is written in a mixture of ANSI C and C++. It comes in complete source code and is made available as "open source"
  3 KB (304 words) - 20:31, 10 June 2022
• Pbmm2
  pbmm2 is a SMRT C++ wrapper for minimap2's C API. Its purpose is to support native PacBio in- and output, provide sets o
  3 KB (303 words) - 20:08, 31 May 2022
• TAU
  ...olkit for performance analysis of parallel programs written in Fortran, C, C++, Java, Python. ...h instrumentation of functions, methods, basic blocks, and statements. All C++ language features are supported including templates and namespaces. The A
  4 KB (581 words) - 22:37, 24 October 2022
• Segemehl
  Hoffmann S, Otto C, Kurtz S, Sharma CM, Khaitovich P, Vogel J, Stadler PF, Hackermueller J: "F Hoffmann S, Otto C, Doose G, Tanzer A, Langenberger D, Christ S, Kunz M, Holdt L, Teupser D, H
  3 KB (406 words) - 22:30, 21 August 2022
• GDSL
  ...ary fully written from scratch in pure ANSI C. It is designed to offer for C programmers common data structures with powerful algorithms, and hidden imp
  3 KB (305 words) - 15:37, 6 June 2022
• Imagej2
  Rueden, C. T., Schindelin, J., Hiner, M. C., DeZonia, B. E., Walter, A. E., Arena, E. T., & Eliceiri, K. W. (2017). Im
  3 KB (308 words) - 16:31, 20 October 2022
• Allhic
  ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data ...embly of allele-aware, chromosomal scale autopolyploid genomes based on Hi-C data. Nature Plants, doi:10.1038/s41477-019-0487-8 (2019).
  3 KB (299 words) - 12:35, 12 August 2022
• KIM
  * C * C++
  3 KB (322 words) - 19:19, 15 August 2022
• Intel Compilers and Libraries
  | C || icc || ''icc compiler_options example.c'' | C++ || icpc || ''icpc compiler_options -o example.exe example.cxx''
  5 KB (612 words) - 18:04, 27 September 2023
• 3d-dna
  ...n: Dudchenko et al., De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds. Science, 2017. ...A.P., et al. (2017). De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds. Science eaal3327. Published online ahea
  3 KB (328 words) - 17:51, 10 June 2022
• Minimac
  ...rnals.org/content/early/2014/10/22/bioinformatics.btu704.short Fuchsberger C, Abecasis GR, Hinds DA. minimac2: faster genotype imputation. Bioinformatic Howie B, Fuchsberger C, Stephens M, Marchini J, and Abecasis GR. Fast and accurate genotype imputa
  3 KB (332 words) - 20:11, 18 August 2022
• OpenCL
  ...evelopers can launch compute kernels written using a limited subset of the C programming language on a GPU. ...wget -q https://raw.github.com/smistad/OpenCL-Getting-Started/master/main.c
  3 KB (365 words) - 17:52, 19 August 2022

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