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  • ...n-us/intel-parallel-studio-xe Intel Compiler Suite] provides Fortran and C/C++ compilers and is preferred compiler option on hipergator. The [https://gcc.gnu.org GNU Compiler Suite] provides Fortran and C/C++ compilers.
    1 KB (159 words) - 22:30, 26 July 2021
  • mpicc ( C source) mpiCC (C++ source)
    3 KB (291 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:library]][[Category:development]][[Category:C++]][[Category:python]] ...the 'glue code' required for the above target languages to call into the C/C++ code. SWIG can also export its parse tree in the form of XML and Lisp s-e
    3 KB (416 words) - 21:24, 6 December 2019
  • ...the 'glue code' required for the above target languages to call into the C/C++ code. SWIG can also export its parse tree in the form of XML and Lisp s-e
    3 KB (400 words) - 21:29, 6 December 2019
  • ...ng dilution Hi-C, in situ Hi-C, DNase Hi-C, Micro-C, capture-C, capture Hi-C or HiChip data. ..., Heard E., Barillot E. HiC-Pro: An optimized and flexible pipeline for Hi-C processing. Genome Biology 2015, 16:259 doi:10.1186/s13059-015-0831-x
    3 KB (426 words) - 16:41, 28 June 2021
  • "Boost provides free peer-reviewed portable C++ source libraries. We emphasize libraries that work well with the C++ Standard Library. Boost libraries are intended to be widely useful, and u
    3 KB (346 words) - 21:05, 6 December 2019
  • sander -O -i amber.in -o amber.log -p amber.prmtop -c amber.inpcrd mpiexec sander.MPI -O -i amber.in -o amber.log -p amber.prmtop -c amber.inpcrd
    1 KB (167 words) - 17:38, 26 June 2017
  • |{{#vardefine:url|http://xerces.apache.org/#xerces-c}} ...or parsing, generating, manipulating, and validating XML documents. Xerces-C++ is faithful to the XML 1.0 and 1.1 recommendations and many associated st
    3 KB (306 words) - 21:29, 6 December 2019
  • ...n rates from population genetic data. The package is available either as C/C++ source code.
    3 KB (294 words) - 21:21, 6 December 2019
  • ...ython interface provides a high-level yet efficient API to use most of the C++ interface with ease.
    3 KB (324 words) - 21:00, 6 December 2019
  • ...stq raw data files and command line tools for feature annotation on the Hi-C maps.
    2 KB (275 words) - 21:22, 6 December 2019
  • The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, Ada, and Go, as well as libraries for these languages (libs
    3 KB (300 words) - 21:20, 6 December 2019
  • annotated C++ sources, but it also supports other popular programming languages such as C, Objective-C, C#, PHP, Java, Python, IDL (Corba and
    3 KB (399 words) - 21:20, 6 December 2019
  • Intel® Cluster Studio features the acclaimed Intel Fortran and C++ Compilers. These performance-oriented compilers can deliver a remarkable Intel Compilers support OpenMP. Developers using C or C++ can create and manage portable, shared-memory parallelism in their applic
    3 KB (327 words) - 21:21, 6 December 2019
  • ...e, G. D., Hunagel, D. E., Lei, J., Achawanantakun, R., Jiao, D., Lawrence, C. J., Ware, D., Shiu, S-H., Childs, K. L., Sun, Y., Jiang, N, Yandell, M. 20
    3 KB (329 words) - 21:22, 6 December 2019
  • | C || icc || ''icc compiler_options example.c'' | C++ || icpc || ''icpc compiler_options -o example.exe example.cxx''
    5 KB (656 words) - 16:48, 13 November 2017
  • ...ing machine learning algorithms and tools for creating complex software in C++ to solve real world problems. See http://dlib.net for the main project do
    2 KB (269 words) - 13:11, 4 May 2020
  • Armadillo is a high quality C++ linear algebra library, aiming towards a good balance between speed and e ...://arma.sourceforge.net/armadillo_nicta_2010.pdf Armadillo: An Open Source C++ Linear Algebra Library for Fast Prototyping and Computationally Intensive
    2 KB (263 words) - 21:19, 6 December 2019
  • A tool to scaffold long read assemblies with Hi-C Ghurye, J., Pop, M., Koren, S., Bickhart, D., & Chin, C. S. (2017). Scaffolding of long read assemblies using long range contact in
    2 KB (266 words) - 21:24, 6 December 2019
  • ...s and has a rich ecosystem of extensions for other languages (such as C++, C#, Java, Python, PHP, Go) and runtimes (such as .NET and Unity).
    2 KB (287 words) - 21:29, 6 December 2019
  • ...e that the Fortran module man not have all supporting binaries that netcdf-c module has.
    3 KB (379 words) - 20:27, 2 August 2021
  • Hi-C scaffolding tool to assemble contigs/scaffolds into complete chromosomes ...Valsecchi, Sarah Toscano, Laura Arrigoni, Fidel Ramirez, Asifa Akhtar. "Hi-C guided assemblies reveal conserved regulatory topologies on X and autosomes
    2 KB (282 words) - 14:23, 21 October 2020
  • ...marsh, P. N. Brown, K. E. Grant, S. L. Lee, R. Serban, D. E. Shumaker, and C. S. Woodward, "SUNDIALS: Suite of Nonlinear and Differential/Algebraic Equa * R. Serban and A. C. Hindmarsh, "CVODES: the Sensitivity-Enabled ODE Solver in SUNDIALS," Proce
    3 KB (356 words) - 21:31, 6 December 2019
  • ...ry for astrophysical simulations and models. Grackle has interfaces for C, C++, Fortran, and Python codes and provides:
    2 KB (290 words) - 22:15, 27 August 2020
  • The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. It is free software under the GNU General
    2 KB (280 words) - 21:31, 6 December 2019
  • BERTopic is a topic modeling technique that leverages transformers and c-TF-IDF to create dense clusters allowing for easily interpretable topics wh [https://zenodo.org/record/4719700 BERTopic: Leveraging BERT and c-TF-IDF to create easily interpretable topics.]
    2 KB (282 words) - 17:35, 25 May 2021
  • J. A. Anderson, C. D. Lorenz, and A. Travesset. General purpose molecular dynamics simulation ...D. Nguyen, J. A. Anderson, P. Liu, F. Spiga, J. A. Millan, D. C. Morse, S. C. Glotzer. Strong scaling of general-purpose molecular dynamics simulations
    5 KB (603 words) - 21:21, 6 December 2019
  • ...re (C), MagickWand (C), ChMagick (Ch), ImageMagickObject (COM+), Magick++ (C++), JMagick (Java), L-Magick (Lisp), Lua, NMagick (Neko/haXe), Magick.NET (
    3 KB (375 words) - 21:22, 6 December 2019
  • PLINK/SEQ is an open-source C/C++ library for working with human genetic variation data. The specific focus
    2 KB (296 words) - 21:22, 6 December 2019
  • vcflib is a simple C++ library for parsing and manipulating VCF files. This library provides a simple API to map each VCF record into a C++ class. See included applications for example usage.
    2 KB (285 words) - 21:29, 6 December 2019
  • ...des several hundreds of computer vision algorithms. Written in optimized C/C++, the library can take advantage of multi-core processing. Enabled with Op
    2 KB (283 words) - 21:31, 6 December 2019
  • PLINK/SEQ is an open-source C/C++ library for working with human genetic variation data. The specific focus
    2 KB (288 words) - 21:22, 6 December 2019
  • ...te (JTS). As such, it aims to contain the complete functionality of JTS in C++. This includes all the ​OpenGIS Simple Features for SQL spatial predica
    3 KB (306 words) - 04:31, 24 March 2021
  • ...olkit for performance analysis of parallel programs written in Fortran, C, C++, UPC, Java, Python. ...methods, basic blocks, and statements as well as event-based sampling. All C++ language features are supported including templates and namespaces. The A
    4 KB (445 words) - 21:29, 6 December 2019
  • ...orage and worklist servers. DCMTK is is written in a mixture of ANSI C and C++. It comes in complete source code and is made available as "open source"
    3 KB (299 words) - 21:21, 6 December 2019
  • ...ary fully written from scratch in pure ANSI C. It is designed to offer for C programmers common data structures with powerful algorithms, and hidden imp
    3 KB (305 words) - 22:06, 27 August 2020
  • ...olkit for performance analysis of parallel programs written in Fortran, C, C++, Java, Python. ...h instrumentation of functions, methods, basic blocks, and statements. All C++ language features are supported including templates and namespaces. The A
    4 KB (575 words) - 21:31, 6 December 2019
  • ...liquid, solid, or gaseous state. It is a open source software, written in C++ and developed at Sandia laboratory. It can be used to model atomic, polym ...CMAKE_INSTALL_PREFIX=<target_lammps_dir> -C ../cmake/presets/all_on.cmake -C ../cmake/presets/nolib.cmake ../cmake
    3 KB (467 words) - 23:34, 20 August 2021
  • Hoffmann S, Otto C, Kurtz S, Sharma CM, Khaitovich P, Vogel J, Stadler PF, Hackermueller J: "F Hoffmann S, Otto C, Doose G, Tanzer A, Langenberger D, Christ S, Kunz M, Holdt L, Teupser D, H
    3 KB (404 words) - 21:24, 6 December 2019
  • * C * C++
    3 KB (323 words) - 21:21, 6 December 2019
  • ...evelopers can launch compute kernels written using a limited subset of the C programming language on a GPU. ...wget -q https://raw.github.com/smistad/OpenCL-Getting-Started/master/main.c
    3 KB (358 words) - 21:22, 6 December 2019
  • Dohm JC, Lottaz C, Borodina T, Himmelbauer H SHARCGS, a fast and highly accurate short-read a Dohm JC, Lottaz C, Borodina T, Himmelbauer H Substantial biases in ultra-short read data sets
    3 KB (314 words) - 21:24, 6 December 2019
  • ...n: Dudchenko et al., De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds. Science, 2017. ...A.P., et al. (2017). De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds. Science eaal3327. Published online ahea
    3 KB (326 words) - 21:10, 6 December 2019
  • ...le, D. E.; Vega Thurber, R. L.; Knight, R.; Beiko, R. G.; and Huttenhower, C. Nature Biotechnology, 1-10. 8 2013.]
    3 KB (342 words) - 21:22, 6 December 2019
  • [[Category:Software]][[Category:library]][[Category:c++]] The Succinct Data Structure Library (SDSL) is a powerful and flexible C++11 library implementing succinct data structures. In total, the library co
    3 KB (350 words) - 21:24, 6 December 2019
  • maqindex -i -c consensus.cns all.map; maqview -c consensus.cns all.map
    3 KB (367 words) - 21:21, 6 December 2019
  • ...rnals.org/content/early/2014/10/22/bioinformatics.btu704.short Fuchsberger C, Abecasis GR, Hinds DA. minimac2: faster genotype imputation. Bioinformatic Howie B, Fuchsberger C, Stephens M, Marchini J, and Abecasis GR. Fast and accurate genotype imputa
    3 KB (332 words) - 21:22, 6 December 2019
  • ...many useful tools for analyzing ChIP-Seq, GRO-Seq, RNA-Seq, DNase-Seq, Hi-C and numerous other types of functional genomics sequencing data sets.
    3 KB (325 words) - 21:21, 6 December 2019
  • BioLite is a bioinformatics framework written in Python/C++ that automates the collection and reporting of diagnostics, tracks proven * A C++ library 'seqio' for efficient I/O of large NGS data files
    3 KB (363 words) - 21:20, 6 December 2019
  • .... Moriarty, R. Oeffner, R. J. Read, D. C. Richardson, J. S. Richardson, T. C. Terwilliger and P. H. Zwart. Acta Cryst. D66, 213-221 (2010).
    3 KB (320 words) - 21:22, 6 December 2019

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