Search results

Fastix
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (249 words) - 19:38, 10 May 2021
Gpufit
[[Category:Software]][[Category:Phylogenetics]]

2 KB (234 words) - 19:34, 26 May 2022
MetaBAT
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (258 words) - 21:21, 6 December 2019
Poretools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (240 words) - 18:50, 21 August 2022
Talk:BioC Requirements Information Gathering
...rearely need jobs that run over a month. Between checkpointing and better software, most of the analyses that I've seen running over 30days on our lab cluster

3 KB (493 words) - 21:42, 2 November 2011
Genblastg
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (306 words) - 18:19, 5 February 2024
Category:Web
[[Category:Software]]

11 members (1 subcategory, 0 files) - 19:51, 22 August 2022
Subphaser
[[Category:Software]]

2 KB (275 words) - 20:42, 28 April 2023
Cluster3
[[Category:Software]][[Category:Biology]][[Category:Genomics]] The open source clustering software available here implement the most commonly used clustering methods for gene

2 KB (274 words) - 18:37, 12 August 2022
Snakemake
[[Category:Software]][[Category:Workflow Automation]][[Category:Biology]] ...inition. Finally, Snakemake workflows can entail a description of required software, which will be automatically deployed to any execution environment.

3 KB (385 words) - 18:51, 15 August 2022
CRISP
[[Category:Software]][[Category:Phylogenetics]] CRISP is a software program to detect SNPs and short indels from pooled sequencing data. CRISP

3 KB (342 words) - 21:01, 6 December 2019
TEtools
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (257 words) - 21:29, 6 December 2019
Xwalk
[[Category:Software]]

3 KB (345 words) - 16:47, 28 February 2023
TPMcalculator
[[Category:Software]][[Category:Phylogenetics]]

2 KB (293 words) - 19:45, 1 June 2022
Theano
[[Category:Software]][[Category:Library]][[Category:Math]][[Category:GPU]] |{{#vardefine:url|http://www.deeplearning.net/software/theano/}}

3 KB (345 words) - 15:58, 6 June 2022
HASLR
[[Category:Software]][[Category:Phylogenetics]]

3 KB (315 words) - 19:53, 17 August 2020
SeqMap
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

3 KB (373 words) - 22:35, 21 August 2022
Datamash
[[Category:Software]][[Category:Math]] |{{#vardefine:url|http://www.gnu.org/software/datamash/}}

2 KB (247 words) - 15:01, 10 June 2022
YAGO
[[Category:Software]]

4 KB (480 words) - 17:13, 15 December 2022
Shasta
[[Category:Software]][[Category:Phylogenetics]]

3 KB (402 words) - 21:24, 6 December 2019
BRM
[[Category:Software]][[Category:Phylogenetics]]

3 KB (320 words) - 21:54, 26 August 2020
LCModel
[[Category:Software]] ...maintenance for LCModel. It's recommended that users install and run this software locally by following instructions posted at http://s-provencher.com/lcm-tes

4 KB (497 words) - 16:28, 15 December 2022
DL POLY
[[Category:Software]][[Category:Molecular Dynamics]] DL_POLY is a general purpose classical molecular dynamics (MD) simulation software developed at Daresbury Laboratory by I.T. Todorov and W. Smith.

2 KB (309 words) - 17:00, 6 June 2022
BIDSCOIN
[[Category:Software]][[Category:Neuroscience]]

2 KB (263 words) - 15:20, 14 March 2023
Saige
[[Category:Software]][[Category:Genomics]]

3 KB (297 words) - 19:29, 20 January 2023
Genomic-fluidity
[[Category:Software]][[Category:Phylogenetics]]

2 KB (282 words) - 21:21, 6 December 2019
SOAPec
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (322 words) - 17:14, 10 June 2022
Anvio
[[Category:Software]][[Category:Biology]]

2 KB (237 words) - 14:20, 12 August 2022
Recon
[[Category:Software]][[Category:Biology]][[Category:Sequencing]] |{{#vardefine:url|http://eddylab.org/software/recon/}}

2 KB (260 words) - 21:38, 21 August 2022
Epiteome
[[Category:Software]][[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 15:06, 15 August 2022
MODELTEST
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (277 words) - 16:18, 10 June 2022
Nanocaller
[[Category:Software]]

3 KB (351 words) - 15:41, 16 March 2023
Snpflip
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

2 KB (247 words) - 00:05, 22 August 2022
Laneta
[[Category:Software]]

2 KB (253 words) - 19:29, 12 August 2022
TEMP
[[Category:Software]][[Category:Phylogenetics]] TEMP is a software package for detecting transposable elements (TEs) insertions and absences f

2 KB (270 words) - 21:29, 6 December 2019
PsiCLASS
[[Category:Software]][[Category:Phylogenetics]]

4 KB (480 words) - 15:00, 14 December 2022
DCC
[[Category:Software]][[Category:biology]][[Category:NGS]]

2 KB (236 words) - 18:45, 12 August 2022
BEAST2-XML
[[Category:Software]][[Category:Phylogenetics]]

2 KB (290 words) - 14:20, 2 September 2020
MOTU
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://www.bork.embl.de/software/mOTU/}}

3 KB (328 words) - 12:00, 19 August 2022
IDBA-MT
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...ased on paired-end RNA sequencing reads only. IDBA-MT is a post-processing software for IDBA-UD contigs for removing chimeria contigs and extending contig leng

3 KB (315 words) - 21:21, 6 December 2019
Mashtree
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]] ...a rapid comparison of whole genome sequence files. Journal of Open Source Software, 4(44), 1762]

2 KB (280 words) - 13:30, 15 August 2022
Category:Animation
[[Category:Software]]

3 members (0 subcategories, 0 files) - 16:17, 3 June 2022
BPP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://abacus.gene.ucl.ac.uk/software.html}}

2 KB (294 words) - 18:21, 12 August 2022
Counterr
[[Category:Software]][[Category:Phylogenetics]]

3 KB (342 words) - 21:15, 6 December 2019
ECE
[[Category:Software]][[Category:Physics]] Ece software container

3 KB (360 words) - 21:39, 3 March 2023
Program Database Toolkit
[[Category:Software]][[Category:Language]][[Category:Programming]][[Category:Performance Analys uniform way through a class library supporting common PDB operations. Software

3 KB (370 words) - 14:38, 18 October 2022
MIKE
[[Category:Software]][[Category:Modeling]][[Category:Geospatial]][[Category:Fluid Dynamics]] MIKE is a range of software products for accurately modeling and simulating any type of challenges in w

2 KB (259 words) - 20:26, 24 August 2022
FastStructure
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (297 words) - 18:54, 12 August 2022
Canu
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (358 words) - 14:26, 14 April 2020
AWSCLI
[[Category:Software]][[Category:Utility]]

2 KB (267 words) - 15:26, 12 August 2022
Gimmemotifs
[[Category:Software]]

2 KB (293 words) - 15:41, 30 June 2023
Aster
[[Category:Software]]

2 KB (267 words) - 17:50, 28 August 2023
Esmf
[[Category:Software]][[Category:geospatial]] The Earth System Modeling Framework (ESMF) is a suite of software tools for developing high-performance, multi-component Earth science modeli

2 KB (256 words) - 20:59, 22 September 2022
TRUST4
[[Category:Software]][[Category:Phylogenetics]]

3 KB (314 words) - 20:12, 8 February 2021
Smartie-sv
[[Category:Software]][[Category:Phylogenetics]]

2 KB (247 words) - 18:30, 1 June 2022
Neovim
[[Category:Software]][[Category:Programming]][[Category:Shell]][[Category:Utility]]

3 KB (327 words) - 20:24, 2 February 2024
Lbzip
[[Category:Software]][[Category:Compression]]

2 KB (274 words) - 14:23, 27 May 2022
Sim4
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (302 words) - 20:41, 12 August 2022
Category:Scheduler
[[Category:Categories]][[Category:Software]]

16 members (1 subcategory, 0 files) - 15:28, 23 August 2022
Graphaligner
[[Category:Software]][[Category:Genomics]]

2 KB (262 words) - 21:48, 12 January 2023
PosiGene
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (358 words) - 21:22, 6 December 2019
CloudCompare
[[Category:Software]][[Category:Visualization]] CloudCompare is a 3D point cloud (and triangular mesh) processing software. It was originally designed to perform comparison between two 3D points clo

3 KB (314 words) - 18:20, 27 January 2020
PAUP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] PAUP is a software package for inference of evolutionary trees.

2 KB (249 words) - 20:15, 12 August 2022
Wengan
[[Category:Software]]

4 KB (472 words) - 20:55, 12 August 2022
ESPRIT
[[Category:Software]][[Category:Biology]]

4 KB (460 words) - 15:10, 15 August 2022
MPFR
[[Category:Software]][[Category:Library]][[Category:Math]]

2 KB (302 words) - 21:22, 6 December 2019
Transrate
[[Category:Software]][[Category:Biology]][[Category:Assembly]] Transrate is software for de-novo transcriptome assembly quality analysis. It examines your assem

3 KB (316 words) - 16:54, 22 August 2022
TraCeR
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (277 words) - 16:40, 22 August 2022
Circtools
[[Category:Software]][[Category:Biology]][[Category:Documentation]] This module enables the use of the circtools software

3 KB (433 words) - 19:03, 27 January 2023
Popoolation
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (321 words) - 21:23, 6 December 2019
Open OnDemand
[[Category:Software]][[Category:GUI]]

7 KB (1,059 words) - 16:46, 5 May 2023
Kraken
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://ccb.jhu.edu/software/kraken/}}

4 KB (483 words) - 19:28, 12 August 2022
Clara
[[Category:Software]][[Category:Machine Learning]]

3 KB (362 words) - 13:39, 15 August 2022
CWLtool
[[Category:Software]][[Category:Workflow Automation]][[Category:Scheduler Apps]]

3 KB (326 words) - 18:29, 11 November 2022
PyBSASeq
[[Category:Software]][[Category:Phylogenetics]]

2 KB (235 words) - 17:14, 1 June 2022
OCOCO
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (284 words) - 21:22, 6 December 2019
Seq-Gen
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://tree.bio.ed.ac.uk/software/seqgen/}}

3 KB (351 words) - 17:58, 10 June 2022
Export2graphlan
export2graphlan is a conversion software tool for producing both

3 KB (314 words) - 15:12, 15 August 2022
Cowast
Coupled Ocean-Atmosphere-Wave-Sediment Trnaspost (COWAST) is public domain software developed by the United States Geological Services. The COWAST modeling sys ...urning on the HDF5 support. The build_coawst.sh, configures and builds the software, and the binary coawstM is installed in the top-level directory.

3 KB (443 words) - 13:28, 27 March 2024
BEAR
[[Category:Software]][[Category:Biology]][[Category:genomics]]

2 KB (274 words) - 18:13, 12 August 2022
DSuite
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (244 words) - 17:17, 2 June 2022
ASPECT
[[Category:Software]][[Category:Library]]

2 KB (285 words) - 15:16, 3 June 2022
Bwa-meth
[[Category:Software]]

2 KB (239 words) - 16:59, 24 August 2023
RoseTTAFold
[[Category:Software]][[Category:Phylogenetics]]

3 KB (291 words) - 21:29, 20 July 2021
NOVOPlasty
[[Category:Software]][[Category:Phylogenetics]]

3 KB (310 words) - 21:23, 6 December 2019
Scipion
[[Category:Software]][[Category:Image Processing]] ...ts and developers. Scipion allows to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all step

2 KB (289 words) - 21:24, 6 December 2019
Tapir
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (275 words) - 16:40, 10 June 2022
Last
[[Category:Software]][[Category:Biology]][[Category:Alignment]][[Category:Sequencing]] |{{#vardefine:exe|}} 

3 KB (342 words) - 19:29, 12 August 2022
Ssr pipeline
[[Category:Software]][[Category:biology]][[Category:Sequencing]] ...hon installed on their computers or who do not have the ability to compile software also may choose to download packaged executable files. These files include

4 KB (501 words) - 18:55, 6 June 2022
PRICE
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://derisilab.ucsf.edu/software/price/}}

2 KB (286 words) - 16:26, 10 June 2022
CisGenome
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

2 KB (249 words) - 18:30, 12 August 2022
MNEtools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (238 words) - 16:13, 6 June 2022
CONN
[[Category:Software]][[Category:imaging]] CONN is an open-source Matlab/SPM-based cross-platform software for the computation, display, and analysis of functional connectivity Magne

3 KB (293 words) - 20:32, 24 August 2022
HTMLDoc
[[Category:Software]][[Category:Documentation]][[Category:Web]]

2 KB (253 words) - 18:34, 15 August 2022
BLUPF90
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...ran 90/95 for mixed model computations in animal breeding. The goal of the software is to be as simple as with a matrix package and as efficient as in a progra

2 KB (275 words) - 16:18, 10 June 2022
CCMetagen
[[Category:Software]][[Category:Phylogenetics]]

3 KB (327 words) - 22:45, 3 January 2022
SoX
[[Category:Software]][[Category:Phylogenetics]]

2 KB (285 words) - 21:24, 6 December 2019
BlobTools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (267 words) - 21:15, 6 December 2019
CLUMPP
[[Category:Software]][[Category:Biology]] You must have configuration files to be able to run this software. The example configuration file can be copied using the following command:

3 KB (351 words) - 18:33, 12 August 2022
CMake
[[Category:Software]][[Category:Programming]] ...designed to build, test and package software. CMake is used to control the software compilation process using simple platform and compiler independent configur

3 KB (326 words) - 13:49, 15 August 2022
RepeatAnalysis
[[Category:Software]][[Category:biology]][[Category:phylogenetics]]

2 KB (238 words) - 14:34, 26 August 2020
Genome Graph Annotation
[[Category:Software]][[Category:Phylogenetics]]

2 KB (283 words) - 22:08, 27 August 2020
SNeP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] SNeP is a piece of software written in C++ that performs historical Effective Population Size (Ne) traj

2 KB (278 words) - 16:23, 10 June 2022
Glimmer
[[Category:Software]][[Category:Biology]][[Category:Annotation]] |{{#vardefine:url|https://ccb.jhu.edu/software/glimmer/index.shtml}}

3 KB (391 words) - 17:09, 15 August 2022
Minia
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]] It is multi-k, to aim for high contiguity. Similar software: MEGAHIT, metaSPAdes.

2 KB (285 words) - 13:31, 15 August 2022
Miniprot
[[Category:Software]]

2 KB (246 words) - 19:48, 31 August 2023
VISPR
[[Category:Software]][[Category:Phylogenetics]]

2 KB (261 words) - 15:53, 21 June 2023
WebLogo
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:Graphics]]

3 KB (417 words) - 17:40, 22 August 2022
Leafaudio
[[Category:Software]][[Category:Audio]][[Category:Machine Learning]]

2 KB (288 words) - 19:49, 15 August 2022
Vscode
[[Category:Software]][[Category:Programming]]

3 KB (405 words) - 14:15, 26 February 2024
Prokka
[[Category:Software]][[Category:Biology]][[Category:Assembly]][[Category:Genomics]] |{{#vardefine:url|http://www.vicbioinformatics.com/software.prokka.shtml}}

2 KB (297 words) - 19:41, 21 August 2022
LIGR
[[Category:Software]][[Category:Biology]][[Category:Assembly]]

2 KB (249 words) - 19:55, 15 August 2022
Magus
[[Category:Software]][[Category:Sequencing]][[Category:Alignment]]

3 KB (327 words) - 17:51, 16 March 2022
OpenMM
[[Category:Software]][[Category:Chemistry]][[Category:Molecular Dynamics]] |{{#vardefine:exe|}} 

2 KB (315 words) - 15:30, 19 August 2022
AMOS
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Assembly]] ...mbly infrastructure. In this sense, AMOS is both a design philosophy and a software system.

3 KB (344 words) - 12:41, 12 August 2022
SpeedSeq
[[Category:Software]][[Category:Phylogenetics]]

2 KB (245 words) - 22:29, 9 December 2020
Dapars
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

3 KB (306 words) - 20:05, 23 March 2023
OPENACC
[[Category:Software]][[Category:Programming]]

2 KB (291 words) - 12:01, 26 August 2022
Msprime
[[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 22:49, 8 September 2020
YASM
[[Category:Software]][[Category:Programming]]

2 KB (292 words) - 17:53, 22 August 2022
CLIPSeqTools
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (303 words) - 20:30, 10 June 2022
Polyply
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (286 words) - 20:48, 18 April 2022
CPAT
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (277 words) - 16:34, 10 June 2022
Nf-core
[[Category:Software]][[Category:Biology]][[Category:Workflow Automation]] Nextflow enables scalable and reproducible scientific workflows using software containers. It allows the adaptation of pipelines written in the most commo

3 KB (332 words) - 18:51, 15 August 2022
LS-DYNA
[[Category:Software]][[Category:Physics]]

3 KB (394 words) - 20:13, 15 August 2022
Bamtofastq
[[Category:Software]][[Category:Phylogenetics]]

3 KB (318 words) - 13:56, 8 March 2021
Rainbowfish
[[Category:Software]][[Category:Phylogenetics]]

2 KB (233 words) - 19:18, 2 June 2022
HPL
[[Category:Software]][[Category:Programming]][[Category:Performance Analysis]]

2 KB (255 words) - 12:01, 26 August 2022
Sabre
[[Category:Software]][[Category:Phylogenetics]]

3 KB (356 words) - 16:32, 2 November 2020
GAML
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (279 words) - 16:51, 15 August 2022
Trinity
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]][[Category:RNA- |{{#vardefine:exe|1}} 

4 KB (556 words) - 17:10, 22 August 2022
CellRanger-ATAC
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]] |{{#vardefine:url|https://support.10xgenomics.com/single-cell-atac/software/overview/welcome}}

2 KB (281 words) - 13:25, 15 August 2022
YASRA
[[Category:Software]] [[Category:biology]][[Category:NGS]][[Category:sequencing]]

3 KB (304 words) - 20:56, 12 August 2022
ITSx
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://microbiology.se/software/itsx/}}

2 KB (275 words) - 19:52, 10 February 2020
Category:Spectroscopy
[[Category:Biology]][[Category:Software]]

7 members (0 subcategories, 0 files) - 15:29, 23 August 2022
Trim isoseq polya
[[Category:Software]]

2 KB (298 words) - 15:04, 19 August 2022
Category:Visualization
[[Category:Software]][[Category:Data]]

19 members (0 subcategories, 0 files) - 14:53, 19 August 2022
MCR
[[Category:Software]][[Category:Math]][[Category:Language]] ...TLAB Runtime enable you to create and distribute numerical applications or software components quickly and securely.

2 KB (292 words) - 18:06, 3 June 2022
REDItools2
[[Category:Software]][[Category:Phylogenetics]]

2 KB (237 words) - 18:05, 1 June 2022
Modules
[[Category:Software]][[Category:Infrastructure]] ...g and maintaining your environment while running a large number of diverse software applications with different requirements can be a daunting task. The Resea

3 KB (428 words) - 18:21, 7 February 2023
Flopp
[[Category:Software]][[Category:Biology]][[Category:Population Biology]] flopp is a software package for single individual haplotype phasing of polyploid organisms from

2 KB (286 words) - 18:35, 1 December 2023
Gapseq
[[Category:Software]][[Category:Chemistry]][[Category:Biology]]

2 KB (252 words) - 14:22, 11 October 2022
Modulus
[[Category:Software]]

3 KB (338 words) - 17:43, 29 August 2022
Lumpy
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (235 words) - 19:46, 12 August 2022
Catch
[[Category:Software]]

3 KB (422 words) - 18:23, 12 August 2022
CIRI
[[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 21:11, 6 December 2019
Mega2
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (310 words) - 21:21, 6 December 2019
GRIDSS
[[Category:Software]][[Category:Phylogenetics]] GRIDSS is a module software suite containing tools useful for the detection of genomic rearrangements.

3 KB (388 words) - 21:20, 6 December 2019
BFAST
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

2 KB (276 words) - 18:16, 12 August 2022
Valouev
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (252 words) - 21:29, 6 December 2019
CodonPhyML
[[Category:Software]][[Category:Phylogenetics]]

2 KB (288 words) - 13:25, 23 July 2020
VTK
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] he Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing and visualization. VTK co

3 KB (360 words) - 20:55, 12 August 2022
Xroms
[[Category:Software]]

2 KB (262 words) - 13:36, 12 January 2024
MONAI label
[[Category:Software]][[Category:Healthcare]]

3 KB (377 words) - 11:56, 19 August 2022
VirtualCell
[[Category:Software]][[Category:Phylogenetics]]

2 KB (259 words) - 21:29, 6 December 2019
MinPath
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (317 words) - 21:22, 6 December 2019
MarginPolish
[[Category:Software]][[Category:Phylogenetics]]

3 KB (320 words) - 21:22, 6 December 2019
Mosdepth
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (265 words) - 21:23, 6 December 2019
EMC
[[Category:Software]][[Category:Simulation]]

2 KB (241 words) - 15:04, 15 August 2022
MUSCLE
[[Category:Software]][[Category:Biology]][[Category:Alignment]] |{{#vardefine:exe|}} 

2 KB (313 words) - 19:55, 12 August 2022
SAMStat
[[Category:Software]][[Category:biology]][[Category:NGS]][[Category:sequencing]]

3 KB (429 words) - 20:34, 12 August 2022
Xpclr
[[Category:Software]][[Category:Phylogenetics]]

2 KB (246 words) - 22:25, 26 August 2020
MMSEQ
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (387 words) - 20:50, 18 August 2022
StringMLST
[[Category:Software]][[Category:Biology]][[Category:ChIP-Seq]]

2 KB (292 words) - 20:45, 12 August 2022
Faqcs
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

2 KB (268 words) - 17:48, 18 May 2023
MSTmap
[[Category:Software]][[Category:Phylogenetics]] MSTmap is a software tool that is capable of constructing genetic linkage maps efficiently and a

3 KB (354 words) - 13:45, 25 March 2020
Wtdbg
[[Category:Software]][[Category:Phylogenetics]]

3 KB (310 words) - 17:44, 22 August 2022
REPdenovo
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (327 words) - 21:43, 21 August 2022
QIIME
[[Category:Software]][[Category:Biology]][[Category:genomics]] ...for Quantitative Insights Into Microbial Ecology. QIIME is an open source software package for comparison and analysis of microbial communities, primarily bas

4 KB (555 words) - 15:15, 19 August 2022
BIOMART
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (310 words) - 18:16, 12 August 2022
Hifiasm
[[Category:Software]][[Category:Phylogenetics]]

3 KB (303 words) - 22:23, 27 August 2020
RSEM
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data

3 KB (390 words) - 21:59, 21 August 2022
LongRanger
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|https://support.10xgenomics.com/genome-exome/software/pipelines/latest/installation}}

2 KB (247 words) - 14:42, 10 June 2022
Ldak
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]] LDAK is a software package for analysing association study data.

2 KB (265 words) - 19:48, 15 August 2022
Dram
[[Category:Software]]

3 KB (361 words) - 14:11, 21 October 2022
NUPACK
[[Category:Software]][[Category:Phylogenetics]] NUPACK is a software suite for the analysis and design of nucleic acid structures, devices, and

2 KB (263 words) - 21:22, 6 December 2019
QOS Limits
CPU cores, Memory (RAM), GPU accelerators, software licenses, etc. are referred to as '''Trackable Resources''' (TRES) by the s

4 KB (598 words) - 03:35, 26 February 2023
Pipe-clip
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (254 words) - 21:22, 6 December 2019
Mccortex
[[Category:Software]][[Category:Phylogenetics]]

3 KB (297 words) - 22:22, 8 September 2020
VEP
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (270 words) - 17:28, 22 August 2022
STAR-Fusion
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (306 words) - 16:02, 22 August 2022
Circompara2
[[Category:Software]][[Category:Phylogenetics]]

2 KB (283 words) - 21:36, 1 April 2022
Discvrseq
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

3 KB (310 words) - 20:10, 11 April 2022
Mercurial
[[Category:Software]][[Category:Revision Control]]

2 KB (253 words) - 19:59, 10 June 2022
QUIP
[[Category:Software]][[Category:Phylogenetics]] ...and is also able to call external packages, and serve as plugins to other software such as LAMMPS, CP2K and also the python framework ASE. Various hybrid comb

3 KB (315 words) - 21:02, 21 August 2022
PhyML
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:exe|}} 

3 KB (465 words) - 20:22, 12 August 2022
Gflags
[[Category:Software]][[Category:Web]][[Category:Library]]

2 KB (291 words) - 17:07, 15 August 2022
Deepbgc
[[Category:Software]][[Category:Phylogenetics]]

2 KB (286 words) - 20:11, 29 September 2020
MEGAN
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://ab.inf.uni-tuebingen.de/software/megan6/}}

3 KB (338 words) - 15:38, 15 April 2024
Bsoft
[[Category:Software]][[Category:Biology]][[Category:Image Processing]] Bsoft is a collection of programs and a platform for development of software for image and molecular processing in structural biology. Problems in struc

2 KB (297 words) - 13:14, 15 August 2022
Stumpy
[[Category:Software]][[Category:Workflow Automation]] ...calable Python Library for Time Series Data Mining. Journal of Open Source Software, 4(39), 1504.

3 KB (430 words) - 15:16, 13 April 2023
DSK
[[Category:Software]][[Category:Biology]][[Category:NGS]] DSK is a k-mer counting software, similar to Jellyfish. DSK can be executed on any machine (only 1 GB memory

3 KB (315 words) - 17:17, 10 June 2022
SWSC-EN
[[Category:Software]][[Category:Phylogenetics]]

3 KB (328 words) - 14:46, 8 January 2020
DiffReps
[[Category:Software]][[Category:Biology]]

4 KB (474 words) - 14:41, 15 August 2022
Minigraph
[[Category:Software]][[Category:Phylogenetics]]

2 KB (279 words) - 18:08, 31 March 2021
MetaCluster
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

3 KB (321 words) - 19:26, 18 August 2022
INLA
[[Category:Software]][[Category:statistics]][[Category:modeling]][[Category:Programming]]

2 KB (236 words) - 12:20, 26 August 2022
Finemap
[[Category:Software]][[Category:Phylogenetics]]

3 KB (303 words) - 14:48, 10 November 2020
GCTA
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Variant Calling]] |{{#vardefine:url|http://cnsgenomics.com/software/gcta/index.html}}

3 KB (331 words) - 12:56, 15 August 2022
Category:Compression
[[Category:Software]]

5 members (0 subcategories, 0 files) - 17:21, 3 June 2022
FSA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (307 words) - 20:38, 23 May 2022
WGS Assembler
[[Category:Software]][[Category:biology]][[Category:genomics]] Celera Assembler : scientific software for biological research. Celera Assembler is a de novo whole-genome shotgun

3 KB (359 words) - 20:56, 12 August 2022
MethylDackel
[[Category:Software]][[Category:Phylogenetics]]

3 KB (321 words) - 17:55, 6 March 2020
GapFiller
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (331 words) - 16:52, 15 August 2022
GFam
[[Category:Software]]

3 KB (339 words) - 17:06, 15 August 2022
Napari
[[Category:Software]][[Category:Phylogenetics]]

2 KB (271 words) - 14:23, 19 August 2022
METIS
[[Category:Software]][[Category:Utility]]

2 KB (247 words) - 19:40, 18 August 2022
Meraculous
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (354 words) - 18:36, 10 June 2022
Orthologer
[[Category:Software]][[Category:Biology]] ...e:url|https://www.orthodb.org/orthodb_userguide.html#standalone-orthologer-software}}

2 KB (238 words) - 20:03, 31 May 2022
Relernn
[[Category:Software]]

2 KB (261 words) - 21:20, 6 February 2024
Category:Workflow Automation
[[Category:Software]]

13 members (0 subcategories, 0 files) - 19:51, 22 August 2022
IGoR
[[Category:Software]][[Category:Phylogenetics]] IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing dat

2 KB (271 words) - 13:52, 14 May 2020
VarScan
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...nts a substantial informatics challenge. VarScan is a platform-independent software tool developed at the Genome Institute at Washington University to detect v

3 KB (324 words) - 20:54, 12 August 2022
Detectron2
[[Category:Software]][[Category:Library]]

3 KB (295 words) - 19:33, 15 July 2021
Survival Kit
[[Category:Software]][[Category:Healthcare]] The Survival Kit is primarily intended to fill a gap in the software available to animal breeders who generally tend to use extremely large data

2 KB (263 words) - 16:11, 22 August 2022
Mugsy
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (298 words) - 21:22, 6 December 2019
Ngsremix
[[Category:Software]]

2 KB (259 words) - 21:49, 28 February 2023
R
[[Category:Software]][[Category:Statistics]][[Category:Programming]] |{{#vardefine:exe|1}} 

6 KB (981 words) - 20:45, 16 October 2023
TGICL
[[Category:Software]][[Category:biology]][[Category:NGS]][[Category:sequencing]] |{{#vardefine:url|http://compbio.dfci.harvard.edu/tgi/software/}}

3 KB (340 words) - 20:47, 12 August 2022
Kover
[[Category:Software]][[Category:Phylogenetics]]

3 KB (336 words) - 15:43, 18 August 2020
ChartDirector
[[Category:Software]][[Category:Data Science]][[Category:Library]]

3 KB (397 words) - 13:26, 15 August 2022
BayArea
[[Category:Software]][[Category:Biology]]

2 KB (255 words) - 15:02, 10 June 2022
GenomeThreader
[[Category:Software]][[Category:phylogenetics]] GenomeThreader is a software tool to compute gene structure predictions. The gene structure predictions

3 KB (315 words) - 16:35, 29 November 2021
CANVAS
[[Category:Software]][[Category:Phylogenetics]]

3 KB (342 words) - 22:23, 26 August 2020
Nanodisco
[[Category:Software]][[Category:Phylogenetics]]

3 KB (326 words) - 14:37, 27 August 2021
Tcllib
[[Category:Software]][[Category:Library]] |{{#vardefine:url|https://www.tcl.tk/software/tcllib/}}

2 KB (273 words) - 16:12, 10 June 2022
Nextclade
[[Category:Software]]

2 KB (260 words) - 19:03, 12 January 2023
Gephi
[[Category:Software]][[Category:Visualization]] Gephi is the leading visualization and exploration software for all kinds of graphs and networks.

3 KB (337 words) - 17:42, 11 January 2023
AfterQC
[[Category:Software]][[Category:Phylogenetics]]

3 KB (341 words) - 21:19, 6 December 2019
BayeScan
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]] |{{#vardefine:url|http://cmpg.unibe.ch/software/BayeScan/index.html}}

3 KB (402 words) - 18:10, 12 August 2022
Exonerate
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (303 words) - 18:53, 12 August 2022
Pycoqc
[[Category:Software]] ...ive quality control for Oxford Nanopore Sequencing. Journal of Open Source Software, 4(34), 1236, https://doi.org/10.21105/joss.01236

3 KB (309 words) - 13:55, 21 October 2022
Fast-gep
[[Category:Software]][[Category:Phylogenetics]]

2 KB (283 words) - 15:46, 22 July 2022
Applications
[[Category:Software]]

1 KB (138 words) - 13:26, 27 September 2022
SeSiMCMC
[[Category:Software]][[Category:Sequencing]]

3 KB (299 words) - 22:41, 21 August 2022
Comp-D MPI
[[Category:Software]][[Category:Statistics]]

2 KB (264 words) - 16:54, 9 June 2022
Mapdamage
[[Category:Software]][[Category:Sequencing]][[Category:Biology]][[Category:NGS]]

3 KB (299 words) - 21:28, 16 September 2022
Ufraw
[[Category:Software]][[Category:Data Mining]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

3 KB (316 words) - 14:45, 6 June 2022
GeneRax
[[Category:Software]][[Category:Phylogenetics]]

3 KB (323 words) - 14:25, 12 October 2020
CNV-Seq
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (245 words) - 13:50, 15 August 2022
NpScarf
[[Category:Software]][[Category:Phylogenetics]]

3 KB (326 words) - 14:29, 4 September 2020
Nt
[[Category:Software]]

2 KB (262 words) - 14:38, 15 July 2022
GenomeTools
[[Category:Software]][[Category:Biology]]

2 KB (266 words) - 18:58, 12 August 2022
Skmer
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

2 KB (260 words) - 13:31, 15 August 2022
Category:Data Science
[[Category:Software]][[Category:Data]]

40 members (0 subcategories, 0 files) - 21:45, 24 October 2022
SUNDIALS
[[Category:Software]][[Category:Math]] ...Differential/Algebraic Equation Solvers," ACM Transactions on Mathematical Software, 31(3), pp. 363-396, 2005. Also available as LLNL technical report UCRL-JP-

3 KB (364 words) - 15:25, 19 August 2022
Flappie
[[Category:Software]][[Category:Phylogenetics]]

2 KB (248 words) - 21:20, 6 December 2019
Gaussian License
[[Category:Software]] * I am not a member of a research group developing software competitive to Gaussian.

1 KB (185 words) - 14:26, 30 June 2017
Pdb2pqr
[[Category:Software]][[Category:Biology]][[Category:modeling]]

3 KB (336 words) - 17:51, 15 August 2022
Miniasm
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

3 KB (306 words) - 20:10, 18 August 2022

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