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  • GDrive
    [[Category:Utility]] ...command line utility for interacting with Google Drive. You can use this utility to transfer files between the HiPerGator environment and your UF-provided G
    3 KB (400 words) - 20:03, 5 October 2023
  • Seq crumbs
    ...[[Category:biology]][[Category:sequencing]][[Category:genomics]][[Category:utility]] ...is modeled after the Unix command line text processing utilities so every utility tries to perform a specific task and most of them take a sequence file as i
    3 KB (328 words) - 15:12, 27 May 2022
  • Aria2
    [[Category:Software]][[Category:Utility]] aria2 is a utility for downloading files. The supported protocols are HTTP(S), FTP, SFTP, BitT
    3 KB (326 words) - 14:05, 17 September 2020
  • Gawk
    [[Category:Software]][[Category:Utility]] The awk utility interprets a special-purpose programming language that makes it possible to
    3 KB (356 words) - 16:55, 15 August 2022
  • ReFrame
    [[Category:Software]][[Category:Performance Analysis]][[Category:Utility]]
    2 KB (240 words) - 21:40, 21 August 2022
  • Unrar
    [[Category:Software]][[Category:utility]]
    2 KB (239 words) - 19:16, 3 June 2022
  • Jq
    [[Category:Software]][[Category:Utility]]
    2 KB (241 words) - 19:12, 15 August 2022
  • Gffread
    GFF/GTF parsing utility providing format conversions, region filtering, FASTA sequence extraction a
    2 KB (242 words) - 19:02, 12 August 2022
  • Jo
    [[Category:Software]][[Category:Utility]]
    2 KB (241 words) - 19:12, 15 August 2022
  • METIS
    [[Category:Software]][[Category:Utility]]
    2 KB (247 words) - 19:40, 18 August 2022
  • Langdetect
    [[Category:Utility]]
    2 KB (242 words) - 17:01, 23 August 2022
  • P7zip
    [[Category:Software]][[Category:Utility]]
    2 KB (254 words) - 17:34, 15 August 2022
  • TrackTools
    [[Category:Software]][[Category:Utility]]
    2 KB (251 words) - 16:40, 22 August 2022
  • RHash
    RHash is a console utility for computing and verifying hash sums of files.
    2 KB (249 words) - 21:49, 21 August 2022
  • Pysamstats
    A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence
    2 KB (259 words) - 19:52, 29 September 2020
  • BIRDS
    ...y:Software]][[Category:Imaging]][[Category:Workflow Automation]][[Category:Utility]]
    2 KB (263 words) - 13:01, 15 August 2022
  • AWSCLI
    [[Category:Software]][[Category:Utility]]
    2 KB (267 words) - 15:26, 12 August 2022
  • FLEXLm
    [[Category:Software]][[Category:Utility]]
    2 KB (263 words) - 16:46, 15 August 2022
  • ProSplign
    Splign is a utility for computing cDNA-to-Genomic, or spliced sequence alignments. At the heart
    2 KB (267 words) - 17:08, 1 June 2022
  • Seqmagick
    ...and it's not worth writing scripts for that. seqmagick is a kickass little utility to expose the file format conversion in BioPython in a convenient way.
    2 KB (269 words) - 22:35, 21 August 2022
  • Cx oracle
    [[Category:Software]][[Category:Database]][[Category:Utility]]
    2 KB (269 words) - 14:22, 15 August 2022
  • Convert3D
    [[Category:Imaging]][[Category:Utility]]
    2 KB (279 words) - 17:38, 15 August 2022
  • Tcllib
    Tcllib is a collection of utility modules for Tcl. These modules provide a wide variety of functionality, fro
    2 KB (273 words) - 16:12, 10 June 2022
  • Harvesttools
    HarvestTools is a utility for creating and interfacing with Gingr files, which are efficient archives
    2 KB (285 words) - 17:38, 13 October 2022
  • Nsightsys
    [[Category:Software]][[Category:Utility]][[Category:GPU]][[Category:Performance Analysis]]
    2 KB (278 words) - 20:39, 24 August 2022
  • Sc-im
    [[Category:Software]][[Category:Visualization]][[Category:Utility]]
    2 KB (272 words) - 22:07, 21 August 2022
  • Coreutils
    [[Category:Software]][[Category:Utility]]
    2 KB (301 words) - 14:09, 15 August 2022
  • UDUNITS
    2) a utility; for obtaining the definition of a unit and for converting numeric values b
    2 KB (279 words) - 17:17, 22 August 2022
  • UNCALLED
    Utility for Nanopore Current Alignment to Large Expanses of DNA
    2 KB (281 words) - 20:53, 12 August 2022
  • Bzip2
    [[Category:Software]][[Category:Utility]][[Category:Library]]
    2 KB (289 words) - 13:16, 15 August 2022
  • SoX
    SoX is a cross-platform (Windows, Linux, MacOS X, etc.) command line utility that can convert various formats of computer audio files in to other format
    2 KB (285 words) - 21:24, 6 December 2019
  • GCT
    [[Category:Software]][[Category:File Management]][[Category:Utility]]
    2 KB (290 words) - 13:54, 21 October 2022
  • Preseq
    ...itial sequencing experiment. The estimates can then be used to examine the utility of further sequencing, optimize the sequencing depth, or to screen multiple
    3 KB (303 words) - 20:26, 12 August 2022
  • Pandoc
    [[Category:Software]][[Category:Utility]]
    3 KB (300 words) - 16:31, 21 August 2022
  • Lingua
    [[Category:Utility]]
    3 KB (299 words) - 20:02, 15 August 2022
  • Slurm-drmaa
    PSNC DRMAA for Simple Linux Utility for Resource Management (SLURM) is an implementation of Open Grid Forum D
    3 KB (316 words) - 14:30, 11 July 2023
  • Crest
    CREST was developed as a utility and driver program for the semiempirical quantum chemistry package xtb. The
    3 KB (320 words) - 16:16, 24 April 2023
  • CLHEP
    ...blad at CHEP 92. It is intended to be a set of HEP-specific foundation and utility classes such as random generators, physics vectors, geometry and linear alg
    2 KB (309 words) - 14:10, 13 June 2022
  • Nsight
    [[Category:Software]][[Category:Utility]][[Category:GPU]][[Category:Performance Analysis]]
    3 KB (316 words) - 20:39, 24 August 2022
  • Ragout
    Ragout (Reference-Assisted Genome Ordering UTility) is a tool for chromosome-level scaffolding using multiple references. Give
    3 KB (318 words) - 21:29, 21 August 2022
  • Structure threader
    [[Category:Utility]]
    3 KB (342 words) - 18:56, 3 June 2022
  • PyEGA3
    [[Category:Utility]]
    3 KB (340 words) - 19:01, 29 June 2021
  • Neovim
    [[Category:Software]][[Category:Programming]][[Category:Shell]][[Category:Utility]]
    3 KB (327 words) - 20:24, 2 February 2024
  • GULP
    * The General Utility Lattice Program, J.D. Gale and A.L. Rohl, Mol. Simul., 29, 291-341 (2003)
    3 KB (311 words) - 18:09, 15 August 2022
  • MCScanX
    ...n of synteny and collinearity and extends the software by incorporating 15 utility programs for display and further analyses.
    3 KB (350 words) - 21:21, 6 December 2019
  • Mobsuite
    ...rtson, James et al. “Universal whole-sequence-based plasmid typing and its utility to prediction of host range and epidemiological surveillance.” Microbial
    3 KB (340 words) - 20:03, 10 October 2022
  • Icommands
    [[Category:Software]][[Category:Utility]]
    3 KB (388 words) - 18:39, 15 August 2022
  • Wine
    [[Category:Software]][[Category:Linux]][[Category:Utility]]
    3 KB (367 words) - 17:43, 22 August 2022
  • Vcflib
    ...in the included utilities (*.cpp) comprise the vast bulk of the library's utility for most users.
    3 KB (390 words) - 20:54, 12 August 2022
  • RepeatAnalysisTools
    [[Category:Utility]]
    4 KB (430 words) - 16:55, 15 December 2022
  • GnuPlot
    Gnuplot is a portable command-line driven graphing utility for Linux, OS/2, MS Windows, OSX, VMS, and many other platforms. The source
    3 KB (421 words) - 17:13, 15 August 2022
  • Rsync
    Rsync, which stands for "remote sync," is a utility for copying and syncing data between two computer systems. UFRC now provide
    3 KB (506 words) - 21:25, 28 July 2023
  • Ea-utils
    Erik Aronesty (2013). TOBioiJ : "Comparison of Sequencing Utility Programs", DOI:10.2174/1875036201307010001
    4 KB (438 words) - 14:54, 15 August 2022
  • UFRC environment module
    | socat || [https://linux.die.net/man/1/socat multipurpose relay] utility.
    4 KB (606 words) - 15:57, 23 August 2023
  • HPG Data Management
    ...ency from your data transfers Rsync, which is an incremental file transfer utility that minimizes network usage, is a good choice. It does so by transmitting
    4 KB (587 words) - 19:27, 15 April 2023
  • SRA
    To download SRA data you can use the "ascp" utility from the [http://asperasoft.com/downloads/ Aspera Connect] browser plugin p
    4 KB (601 words) - 19:10, 27 November 2023
  • HPG Scheduling
    UFRC uses the Simple Linux Utility for Resource Management, or '''SLURM''', to allocate resources and schedule
    4 KB (656 words) - 18:36, 9 February 2024
  • DDT
    [[Category:Software]][[Category:Utility]]
    5 KB (754 words) - 19:24, 30 October 2023
  • SAS
    ...upper limit on working memory for procedures that can use both memory and utility disk space, such as PROC SUMMARY and PROC SORT, so that they can avoid virt
    5 KB (775 words) - 13:48, 15 September 2023
  • OrthoMCL
    ...ing species-specific gene expansion families. So it serves as an important utility for automated eukaryotic genome annotation. OrthoMCL starts with reciprocal
    5 KB (748 words) - 22:40, 28 January 2024
  • Spark
    [[Category:Software]][[Category:Utility]]
    11 KB (1,573 words) - 22:01, 15 December 2022
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