Search results

• PurgeDups
  Purge haplotigs and overlaps in an assembly based on read depth
  2 KB (257 words) - 18:50, 27 May 2022
• Rainbow
  clustering and de novo assembly.
  2 KB (254 words) - 21:24, 6 December 2019
• Staden
  A fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis tools (Spin) for Unix, Linux, MacOSX
  2 KB (254 words) - 15:59, 22 August 2022
• Skmer
  ...mes from low-coverage sequencing reads (genome-skims), without needing any assembly or alignment step.
  2 KB (260 words) - 13:31, 15 August 2022
• WhatsHap
  ...ts using DNA sequencing reads, also called read-based phasing or haplotype assembly. It is especially suitable for long reads, but works also well with short r
  2 KB (269 words) - 21:29, 6 December 2019
• JCVI
  ...libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics.
  2 KB (265 words) - 14:30, 4 September 2020
• Yagcloser
  [[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Assembly]]
  2 KB (265 words) - 19:07, 1 April 2024
• RagTag
  Fast reference-guided genome assembly scaffolding
  2 KB (263 words) - 15:27, 13 August 2020
• Pbipa
  ...ved Phased Assembler (IPA) is the official PacBio software for HiFi genome assembly. IPA was designed to utilize the accuracy of PacBio HiFi reads to produce h
  2 KB (268 words) - 21:58, 27 April 2022
• Fast-gep
  ...r high-resolution genealogical relationship of bacterial isolates with WGS assembly data.
  2 KB (283 words) - 15:46, 22 July 2022
• DRAP
  Short read RNASeq de novo assembly is a well established method to study transcription of organisms lacking a
  2 KB (280 words) - 21:20, 6 December 2019
• Shovill
  ...uses SPAdes at its core, but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also supports other assem
  2 KB (286 words) - 18:13, 23 August 2022
• FALCON fc run cfg
  # The length cutoff used for seed reads usef for pre-assembly
  2 KB (248 words) - 20:31, 2 August 2021
• PRICE
  ...es from such complex datasets, and it is also being applied to the de novo assembly of large individual genomes.
  2 KB (286 words) - 16:26, 10 June 2022
• GROCSVs
  ...eline for identifying large-scale structural variants, performing sequence assembly at the breakpoints, and reconstructing the complex structural variants usin
  2 KB (274 words) - 21:21, 6 December 2019
• PhyloFlash
  ...KB Seah, Elmar Pruesse. phyloFlash — Rapid SSU rRNA profiling and targeted assembly from metagenomes.]
  2 KB (279 words) - 00:09, 29 October 2020
• BRIG
  ...arisons between a large number of genomes, with a focus on handling genome assembly data.
  2 KB (278 words) - 16:25, 10 June 2022
• RaGOO
  A tool to order and orient genome assembly contigs via Minimap2 alignments to a reference genome.
  2 KB (280 words) - 21:24, 6 December 2019
• GetOrganelle
  ...Li. 2018. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes. bioRxiv, 256479.]
  2 KB (275 words) - 21:21, 6 December 2019
• FALCON fc large run cfg
  # The length cutoff used for seed reads usef for pre-assembly
  2 KB (266 words) - 20:30, 2 August 2021

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