Search results

• TACO
  TACO: Multi-sample transcriptome assembly from RNA-Seq
  2 KB (234 words) - 18:53, 1 June 2022
• RACA
  RACA: Reference-Assisted Chromosome Assembly
  2 KB (235 words) - 19:45, 10 June 2022
• BUSCO
  BUSCO stands for Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Ortholo BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.
  5 KB (607 words) - 19:38, 27 March 2023
• FRAMA
  Description: a transcriptome assembly and mRNA annotation pipeline
  2 KB (236 words) - 21:21, 6 December 2019
• Ipyrad
  ipyrad, an interactive toolkit for assembly and analysis of restriction-site associated genomic data sets (e.g., RAD, d
  2 KB (239 words) - 19:00, 15 August 2022
• MetaBCC-LR
  ...bly helps to enhance the assembly quality while significantly reducing the assembly cost in terms of time and memory usage. The efficiency and accuracy of Meta
  6 KB (774 words) - 14:28, 15 December 2022
• Assemblytics
  Assemblytics: a web analytics tool for the detection of variants from an assembly
  2 KB (252 words) - 17:02, 29 September 2020
• Asset
  ...acbio, 10X, Bionano, HiC) to accumulate the support evidence for a de novo assembly.
  2 KB (253 words) - 20:07, 15 June 2023
• NECAT
  NECAT is an error correction and de-novo assembly tool for Nanopore long noisy reads.
  2 KB (250 words) - 13:32, 23 June 2020
• Clview
  Clview is an nteractive tool for inspecting the ACE format assembly files generated by CAP3 or phrap.
  2 KB (252 words) - 13:48, 15 August 2022
• PurgeDups
  Purge haplotigs and overlaps in an assembly based on read depth
  2 KB (257 words) - 18:50, 27 May 2022
• Rainbow
  clustering and de novo assembly.
  2 KB (254 words) - 21:24, 6 December 2019
• Staden
  A fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis tools (Spin) for Unix, Linux, MacOSX
  2 KB (254 words) - 15:59, 22 August 2022
• Skmer
  ...mes from low-coverage sequencing reads (genome-skims), without needing any assembly or alignment step.
  2 KB (260 words) - 13:31, 15 August 2022
• WhatsHap
  ...ts using DNA sequencing reads, also called read-based phasing or haplotype assembly. It is especially suitable for long reads, but works also well with short r
  2 KB (269 words) - 21:29, 6 December 2019
• JCVI
  ...libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics.
  2 KB (265 words) - 14:30, 4 September 2020
• Yagcloser
  [[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Assembly]]
  2 KB (265 words) - 19:07, 1 April 2024
• RagTag
  Fast reference-guided genome assembly scaffolding
  2 KB (263 words) - 15:27, 13 August 2020
• Pbipa
  ...ved Phased Assembler (IPA) is the official PacBio software for HiFi genome assembly. IPA was designed to utilize the accuracy of PacBio HiFi reads to produce h
  2 KB (268 words) - 21:58, 27 April 2022
• Fast-gep
  ...r high-resolution genealogical relationship of bacterial isolates with WGS assembly data.
  2 KB (283 words) - 15:46, 22 July 2022

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