Search results

• SHARCGS
  Dohm JC, Lottaz C, Borodina T, Himmelbauer H SHARCGS, a fast and highly accurate short-read a Dohm JC, Lottaz C, Borodina T, Himmelbauer H Substantial biases in ultra-short read data sets
  3 KB (313 words) - 22:42, 21 August 2022
• PICRUSt
  ...le, D. E.; Vega Thurber, R. L.; Knight, R.; Beiko, R. G.; and Huttenhower, C. Nature Biotechnology, 1-10. 8 2013.]
  3 KB (344 words) - 18:28, 10 June 2022
• HOMER
  ...many useful tools for analyzing ChIP-Seq, GRO-Seq, RNA-Seq, DNase-Seq, Hi-C and numerous other types of functional genomics sequencing data sets.
  3 KB (330 words) - 18:19, 15 August 2022
• Maq
  maqindex -i -c consensus.cns all.map; maqview -c consensus.cns all.map
  3 KB (377 words) - 19:47, 12 August 2022
• Phenix
  .... Moriarty, R. Oeffner, R. J. Read, D. C. Richardson, J. S. Richardson, T. C. Terwilliger and P. H. Zwart. Acta Cryst. D66, 213-221 (2010).
  3 KB (325 words) - 18:12, 21 August 2022
• Biolite
  BioLite is a bioinformatics framework written in Python/C++ that automates the collection and reporting of diagnostics, tracks proven * A C++ library 'seqio' for efficient I/O of large NGS data files
  3 KB (362 words) - 12:54, 15 August 2022
• BUCKy
  [http://mbe.oxfordjournals.org/content/24/2/412.abstract?etoc C. Ané, B. Larget, D.A. Baum, S.D. Smith, A. Rokas (2007). Bayesian estimati ...l.pdf?ijkey=BIwQBlPEqeEiojQ&keytype=ref B. Larget, S.K. Kotha, C.N. Dewey, C. Ané (2010). BUCKy: Gene tree / species tree reconciliation with the Bayes
  3 KB (386 words) - 13:15, 15 August 2022
• Elastix
  ...Elastix, making it available in languages like C++, Python, Java, R, Ruby, C# and Lua.
  3 KB (365 words) - 15:30, 3 June 2022
• Mamba
  Mamba is a reimplementation of the conda package manager in C++. core parts of mamba are implemented in C++ for maximum efficiency
  3 KB (429 words) - 20:16, 3 June 2022
• Genesis
  1. C. Kobayashi, J. Jung, Y. Matsunaga, T. Mori, T. Ando, K. Tamura, M. Kamiya, 2. J. Jung, T. Mori, C. Kobayashi, Y. Matsunaga, T. Yoda, M. Feig, and Y. Sugita, WIREs Comput. Mo
  3 KB (368 words) - 17:51, 3 April 2024
• ChartDirector
  VBScript, VBA, JavaScript, .NET (C#/VB), Java, JSP, C++, PHP, Perl, Python,
  3 KB (397 words) - 13:26, 15 August 2022
• USEARCH
  Edgar, Robert C. - Search and clustering orders of magnitude faster than BLAST Author : Edgar, Robert C.
  4 KB (559 words) - 17:19, 22 August 2022
• PICSL
  [1] H. Wang, J. W. Suh, S. Das, J. Pluta, C. Craige, P. Yushkevich, "Multi-atlas segmentation [2] H. Wang, S. R. Das, J. W. Suh, M. Altinay, J. Pluta, C. Craige, B. B. Avants, and P. A. Yushkevich,
  3 KB (390 words) - 20:31, 24 August 2022
• SLURM Environmental Variables
  ...Number of cores per task. I.e., the value given to the -cpus-per-task or -c sbatch options. Not set unless one of those options given.
  1 KB (236 words) - 17:43, 5 March 2024
• CASM
  [ref2] J. C. Thomas, A. Van der Ven, Finite-temperature properties of strongly anharmon [ref4] A. Van der Ven, J. C. Thomas, Q. Xu, J. Bhattacharya “Linking the electronic structure of soli
  4 KB (453 words) - 13:20, 15 August 2022
• EDTA
  ...J., Lugo C. S. B., Elliott T. A., Ware D., Peterson T., Jiang N.✉, Hirsch C. N.✉ and Hufford M. B.✉ (2019). Benchmarking Transposable Element Annot
  4 KB (474 words) - 21:27, 14 September 2023
• LAMMPS
  ...liquid, solid, or gaseous state. It is a open source software, written in C++ and developed at Sandia laboratory. It can be used to model atomic, polym ...CMAKE_INSTALL_PREFIX=<target_lammps_dir> -C ../cmake/presets/all_on.cmake -C ../cmake/presets/nolib.cmake ../cmake
  5 KB (731 words) - 20:30, 6 April 2024
• Account and QOS limits under SLURM
  #Looks good, let's terminate the request with Ctrl+C> ^C
  8 KB (1,354 words) - 18:36, 9 February 2024
• AMBER
  ...Cheatham, III, T. Darden, H. Gohlke, R. Luo, K.M. Merz, Jr., A. Onufriev, C. Simmerling, B. Wang and R. Woods. The Amber biomolecular simulation progra ...-J. Hsieh, G. Cui, D.R. Roe, D.H. Mathews, M.G. Seetin, R. Salomon-Ferrer, C. Sagui, V. Babin, T. Luchko, S. Gusarov, A. Kovalenko, and P.A. Kollman (20
  5 KB (736 words) - 20:09, 5 February 2024
• Tensorboard
  ...orBoard 2.4.0 at '''<nowiki>http://localhost:6006/</nowiki>''' (Press CTRL-C to quit)
  2 KB (231 words) - 21:03, 12 December 2023

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