Search results

• FlowCraft
  FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. 🐳📦
  2 KB (246 words) - 14:18, 10 July 2020
• MAGeCKFlute
  MAGeCKFlute - Integrative analysis pipeline for pooled CRISPR functional genetic screens.
  2 KB (252 words) - 20:24, 15 August 2022
• Spacemake
  Spacemake: pipeline for processing and analysing sequencing based spatial-transcriptomics data
  2 KB (249 words) - 22:12, 22 September 2022
• MiRBShunter
  A pipeline to identify miRNA binding sites from Ago2-CLIP data by de novo motif findin
  2 KB (252 words) - 21:21, 6 December 2019
• CBGpipe
  This pipeline is designed to complete circular bacterial genomes using a sampling strateg
  2 KB (255 words) - 21:59, 26 August 2020
• Hyb
  Hyb is a bioinformatics pipeline for analysis of CLASH (crosslinking, ligation and sequencing of hybrids) da
  2 KB (247 words) - 15:07, 10 June 2022
• SqueezeMeta
  SqueezeMeta: a fully automated metagenomics pipeline, from reads to bins
  2 KB (255 words) - 15:47, 28 April 2022
• Rnaseqlib
  rnaseqlib is a simple, lightweight pipeline for RNA-Seq analysis.
  2 KB (247 words) - 15:15, 10 June 2022
• MAGeCK-VISPR
  MAGeCK-VISPR is a comprehensive quality control, analysis and visualization pipeline for CRISPR/Cas9 screens build on top of MAGeCK and VISPR.
  2 KB (251 words) - 20:21, 26 May 2022
• Hgtector
  HGTector is a computational pipeline for genome-wide detection of putative horizontal gene transfer (HGT) events
  2 KB (253 words) - 17:04, 10 October 2022
• MitoFinder
  Mitofinder is a pipeline to assemble mitochondrial genomes and extract mitochondrial genes from trim
  2 KB (255 words) - 21:23, 6 December 2019
• Quantas
  Quantas: A pipeline to analyze alternative splicing using RNA-Seq
  2 KB (247 words) - 20:29, 12 August 2022
• Varpipe-wgs
  This repository contains an analysis pipeline developed to characterize WGS output
  2 KB (261 words) - 16:22, 15 March 2023
• Mrtrix3tissue
  Improved bioinformatic pipeline to identify and quantify circRNA expression
  2 KB (255 words) - 16:51, 30 January 2023
• Toil
  Toil is a scalable, efficient, cross-platform pipeline management system, written entirely in Python, and designed around the prin
  2 KB (258 words) - 20:47, 12 August 2022
• Tapestri
  Pipeline developed by Mission Bio for the analysis of single-cell sequencing data in
  2 KB (258 words) - 19:07, 1 June 2022
• Merge peaks
  CWL-defined pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks
  2 KB (254 words) - 18:51, 15 August 2022
• BIRDS
  ...r efficient, versatile mapping of mouse brain）is an open source automation pipeline suitable for brain data from different microscopy platforms.
  2 KB (263 words) - 13:01, 15 August 2022
• FLEA
  |{{#vardefine:url|https://github.com/veg/flea-pipeline}} FLEA is a bioinformatics pipeline for analyzing longitudinal sequencing data from the Pacific Biosciences RS-
  2 KB (260 words) - 22:01, 27 August 2020
• Braker
  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneM
  2 KB (261 words) - 22:28, 26 August 2020

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