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  • Unified PHYling pipeline for phylogenomic data collection from annotated Stajich JE. 2017 PHYling: Phylogenomic pipeline from core markers on genomes to unassembled reads. https://github.com/staji
    3 KB (377 words) - 12:01, 1 July 2021
  • [[Category:Pipeline]] Mikado is a lightweight Python3 pipeline to identify the most useful or
    4 KB (495 words) - 21:50, 13 January 2022
  • Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes blast a ...cchia F, Basu S, Petrosino G, Salvemini M, Sanges R. Annocript: a flexible pipeline for the annotation of transcriptomes which can also identify putative long
    3 KB (387 words) - 21:18, 6 December 2019
  • ...erformance computing environment providing a scalability that makes this a Pipeline to Annotate Whole-genome Sequences (PAWS). The flexibility of evidences tha ...cles/10.1186/1746-4811-5-8 JC Estill and JL Bennetzen. 2009. "The DAWGPAWS pipeline for the annotation of genes and transposable elements in plant genomes." Pl
    3 KB (381 words) - 21:20, 6 December 2019
  • ...of each technology and assembly method if they were used in isolation. The pipeline is based on perl scripts and third-party open source software like the AMOS
    3 KB (390 words) - 21:20, 6 December 2019
  • ...igh-performance and automatic functional annotation tasks. This Annotation Pipeline allows your to integrate and automate your functional annotation task in a
    2 KB (275 words) - 19:42, 16 February 2018
  • -p PIPELINE_FILENAME, --pipeline=PIPELINE_FILENAME Load this pipeline file on startup
    7 KB (869 words) - 21:12, 6 December 2019
  • The pipeline is flexible, scalable and optimized. It can operate either on a single lapt ...t JP., Dekker J., Heard E., Barillot E. HiC-Pro: An optimized and flexible pipeline for Hi-C processing. Genome Biology 2015, 16:259 doi:10.1186/s13059-015-083
    3 KB (426 words) - 16:41, 28 June 2021
  • Stacks is a software pipeline for building loci out of a set of short-read sequenced samples. Stacks was The command line pipeline is available via the "stacks" environment module.
    4 KB (638 words) - 18:51, 9 June 2021
  • Fast-Plast is a pipeline that leverages existing and novel programs to quickly assemble, orient, and ...sembly implemented in afin to close gaps of contigs with low coverage. The pipeline then identifies regions from the quadripartite structure of the chloroplast
    4 KB (487 words) - 21:20, 6 December 2019
  • Description: Eukaryote Non-Model Transcriptome Annotation Pipeline
    2 KB (236 words) - 21:20, 6 December 2019
  • Description: a transcriptome assembly and mRNA annotation pipeline
    2 KB (236 words) - 21:21, 6 December 2019
  • A computational pipeline for processing Illumina sequence capture data
    2 KB (246 words) - 21:24, 6 December 2019
  • FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. 🐳📦
    2 KB (246 words) - 14:18, 10 July 2020
  • Bioinformatics pipeline for discovery of genetic variants from NGS reads.
    2 KB (237 words) - 21:24, 6 December 2019
  • A pipeline to identify miRNA binding sites from Ago2-CLIP data by de novo motif findin
    2 KB (252 words) - 21:21, 6 December 2019
  • This pipeline is designed to complete circular bacterial genomes using a sampling strateg
    2 KB (255 words) - 21:59, 26 August 2020
  • A versatile aligning pipeline for bisulfite sequencing data.
    2 KB (237 words) - 21:02, 6 December 2019
  • Mitofinder is a pipeline to assemble mitochondrial genomes and extract mitochondrial genes from trim
    2 KB (255 words) - 21:23, 6 December 2019
  • Phasing and SV Calling Pipeline
    2 KB (245 words) - 21:21, 6 December 2019

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