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  • Redundans pipeline assists an assembly of heterozygous genomes. .../2457531 Leszek P. Pryszcz and Toni Gabaldón (2016) Redundans: an assembly pipeline for highly heterozygous genomes. NAR. doi: 10.1093/nar/gkw294]
    3 KB (332 words) - 21:24, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Pipeline]][[Category:Genomics]] The pipeline is flexible, scalable and optimized. It can operate either on a single lapt
    3 KB (432 words) - 18:17, 15 August 2022
  • A pipeline consisted of a couple of scripts for genome-wide RGAs prediction, most of s ...Quan, X., Jia, G., Xiao, J., Cloutier, S. and You, F.M. (2016) RGAugury: a pipeline for genome-wide prediction of resistance gene analogs (RGAs) in plants. BMC
    3 KB (339 words) - 16:41, 24 February 2022
  • ...can specify the preferred software to be used to perform each step of the pipeline. In addition, several parameters can be used to define whether to apply tri
    3 KB (375 words) - 17:57, 9 June 2022
  • ...ense. The pipeline revised for 454 data was named CABOG (Miller 2008). The pipeline revised for PacBio/Oxford was named 'PBcR' (Berlin 2015).
    3 KB (359 words) - 20:56, 12 August 2022
  • Unified PHYling pipeline for phylogenomic data collection from annotated Stajich JE. 2017 PHYling: Phylogenomic pipeline from core markers on genomes to unassembled reads. https://github.com/staji
    3 KB (375 words) - 18:17, 3 June 2022
  • [[Category:Pipeline]] Mikado is a lightweight Python3 pipeline to identify the most useful or
    4 KB (493 words) - 19:39, 3 June 2022
  • Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes blast a ...cchia F, Basu S, Petrosino G, Salvemini M, Sanges R. Annocript: a flexible pipeline for the annotation of transcriptomes which can also identify putative long
    3 KB (387 words) - 21:18, 6 December 2019
  • ...erformance computing environment providing a scalability that makes this a Pipeline to Annotate Whole-genome Sequences (PAWS). The flexibility of evidences tha ...cles/10.1186/1746-4811-5-8 JC Estill and JL Bennetzen. 2009. "The DAWGPAWS pipeline for the annotation of genes and transposable elements in plant genomes." Pl
    3 KB (381 words) - 21:20, 6 December 2019
  • -p PIPELINE_FILENAME, --pipeline=PIPELINE_FILENAME Load this pipeline file on startup
    8 KB (889 words) - 13:24, 15 August 2022
  • [[Category:Pipeline]] ...Booker, Hideki Innan, Ryohei Terauchi, Akira Abe (2020). High performance pipeline for MutMap and QTL-seq.[URL]
    3 KB (410 words) - 19:05, 31 January 2022
  • Stacks is a software pipeline for building loci out of a set of short-read sequenced samples. Stacks was The command line pipeline is available via the "stacks" environment module.
    4 KB (648 words) - 20:44, 12 August 2022
  • Fast-Plast is a pipeline that leverages existing and novel programs to quickly assemble, orient, and ...sembly implemented in afin to close gaps of contigs with low coverage. The pipeline then identifies regions from the quadripartite structure of the chloroplast
    4 KB (487 words) - 21:20, 6 December 2019
  • OrthoDB standalone pipeline for delineation of orthologs
    2 KB (238 words) - 20:03, 31 May 2022
  • Bioinformatics pipeline for discovery of genetic variants from NGS reads.
    2 KB (237 words) - 19:49, 10 June 2022
  • Description: Eukaryote Non-Model Transcriptome Annotation Pipeline
    2 KB (236 words) - 21:20, 6 December 2019
  • A versatile aligning pipeline for bisulfite sequencing data.
    2 KB (238 words) - 14:40, 10 June 2022
  • Description: a transcriptome assembly and mRNA annotation pipeline
    2 KB (236 words) - 21:21, 6 December 2019
  • Pipeline to generate complete public health microbiology reports from sequenced isol
    2 KB (241 words) - 19:38, 31 May 2022
  • Phasing and SV Calling Pipeline
    2 KB (247 words) - 14:42, 10 June 2022

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