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- ...le, D. E.; Vega Thurber, R. L.; Knight, R.; Beiko, R. G.; and Huttenhower, C. Nature Biotechnology, 1-10. 8 2013.]3 KB (344 words) - 18:28, 10 June 2022
- ...many useful tools for analyzing ChIP-Seq, GRO-Seq, RNA-Seq, DNase-Seq, Hi-C and numerous other types of functional genomics sequencing data sets.3 KB (330 words) - 18:19, 15 August 2022
- maqindex -i -c consensus.cns all.map; maqview -c consensus.cns all.map3 KB (377 words) - 19:47, 12 August 2022
- .... Moriarty, R. Oeffner, R. J. Read, D. C. Richardson, J. S. Richardson, T. C. Terwilliger and P. H. Zwart. Acta Cryst. D66, 213-221 (2010).3 KB (325 words) - 18:12, 21 August 2022
- BioLite is a bioinformatics framework written in Python/C++ that automates the collection and reporting of diagnostics, tracks proven * A C++ library 'seqio' for efficient I/O of large NGS data files3 KB (362 words) - 12:54, 15 August 2022
- [http://mbe.oxfordjournals.org/content/24/2/412.abstract?etoc C. Ané, B. Larget, D.A. Baum, S.D. Smith, A. Rokas (2007). Bayesian estimati ...l.pdf?ijkey=BIwQBlPEqeEiojQ&keytype=ref B. Larget, S.K. Kotha, C.N. Dewey, C. Ané (2010). BUCKy: Gene tree / species tree reconciliation with the Bayes3 KB (386 words) - 13:15, 15 August 2022
- ...Elastix, making it available in languages like C++, Python, Java, R, Ruby, C# and Lua.3 KB (365 words) - 15:30, 3 June 2022
- Mamba is a reimplementation of the conda package manager in C++. core parts of mamba are implemented in C++ for maximum efficiency3 KB (429 words) - 20:16, 3 June 2022
- VBScript, VBA, JavaScript, .NET (C#/VB), Java, JSP, C++, PHP, Perl, Python,3 KB (397 words) - 13:26, 15 August 2022
- Edgar, Robert C. - Search and clustering orders of magnitude faster than BLAST Author : Edgar, Robert C.4 KB (559 words) - 17:19, 22 August 2022
- [1] H. Wang, J. W. Suh, S. Das, J. Pluta, C. Craige, P. Yushkevich, "Multi-atlas segmentation [2] H. Wang, S. R. Das, J. W. Suh, M. Altinay, J. Pluta, C. Craige, B. B. Avants, and P. A. Yushkevich,3 KB (390 words) - 20:31, 24 August 2022
- ...liquid, solid, or gaseous state. It is a open source software, written in C++ and developed at Sandia laboratory. It can be used to model atomic, polym ...CMAKE_INSTALL_PREFIX=<target_lammps_dir> -C ../cmake/presets/all_on.cmake -C ../cmake/presets/nolib.cmake ../cmake5 KB (689 words) - 14:23, 4 October 2023
- ...Number of cores per task. I.e., the value given to the -cpus-per-task or -c sbatch options. Not set unless one of those options given.1 KB (236 words) - 17:43, 5 March 2024
- [ref2] J. C. Thomas, A. Van der Ven, Finite-temperature properties of strongly anharmon [ref4] A. Van der Ven, J. C. Thomas, Q. Xu, J. Bhattacharya “Linking the electronic structure of soli4 KB (453 words) - 13:20, 15 August 2022
- ...J., Lugo C. S. B., Elliott T. A., Ware D., Peterson T., Jiang N.✉, Hirsch C. N.✉ and Hufford M. B.✉ (2019). Benchmarking Transposable Element Annot4 KB (474 words) - 21:27, 14 September 2023
- #Looks good, let's terminate the request with Ctrl+C> ^C8 KB (1,354 words) - 18:36, 9 February 2024
- ...Cheatham, III, T. Darden, H. Gohlke, R. Luo, K.M. Merz, Jr., A. Onufriev, C. Simmerling, B. Wang and R. Woods. The Amber biomolecular simulation progra ...-J. Hsieh, G. Cui, D.R. Roe, D.H. Mathews, M.G. Seetin, R. Salomon-Ferrer, C. Sagui, V. Babin, T. Luchko, S. Gusarov, A. Kovalenko, and P.A. Kollman (205 KB (736 words) - 20:09, 5 February 2024
- ...orBoard 2.4.0 at '''<nowiki>http://localhost:6006/</nowiki>''' (Press CTRL-C to quit)2 KB (231 words) - 21:03, 12 December 2023
- ===cuda_bm.c=== {{#fileAnchor: cuda_bm.c}}12 KB (1,540 words) - 17:09, 21 December 2022
- c) Copy remote e/n/d/r/c/s/q> n6 KB (763 words) - 20:07, 30 October 2023
- ...eate as many terminal windows in the screen session as needed with 'Ctrl+a c' key combination. See [[Screen]] documentation. Ctrl+a c4 KB (719 words) - 13:36, 2 January 2023
- Fastest Fourier Transform in the West, is a C library for computing the Discrete Fourier Transform (DFT) in one or more d2 KB (223 words) - 16:41, 15 August 2022
- Mach2VCF is a C++ tool to convert MaCH files to VCF files.2 KB (242 words) - 14:49, 10 June 2022
- Validation suite for Variant Call Format (VCF) files, implemented using C++112 KB (249 words) - 17:27, 22 August 2022
- DosageConvertor is a C++ tool to convert dosage files (in VCF format) from Minimac3 to ther format2 KB (252 words) - 15:04, 10 June 2022
- SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.2 KB (247 words) - 17:57, 19 August 2022
- OpenSlide is a C library that provides a simple interface to read whole-slide images2 KB (248 words) - 21:22, 6 December 2019
- ...arch Computing. To run CellProfiler in batch mode, you should include the -c or --run-headless option. Also, you want to use CELLPROFILER_USE_XVFB="1" -c, --run-headless Run headless (without the GUI)8 KB (910 words) - 21:29, 21 December 2022
- Widely used C++ template library for task parallelism.2 KB (259 words) - 21:29, 6 December 2019
- TALESF is a C library for identifying potential binding sites for transcription activator2 KB (256 words) - 21:29, 6 December 2019
- ...e fast all-in-one preprocessing for FastQ files. This tool is developed in C++ with multithreading supported to afford high performance.2 KB (256 words) - 15:23, 15 August 2022
- C++ implementation of the Google logging module2 KB (269 words) - 17:10, 15 August 2022
- C++ library and its applications to generate and process accurate consensus s2 KB (268 words) - 17:48, 15 August 2022
- ...nome informatics) combined into a single binary named gt. It is based on a C library named “libgenometools” which consists of several modules.2 KB (266 words) - 18:58, 12 August 2022
- Networks. It is a C++ template library providing efficient implementations2 KB (268 words) - 15:41, 6 June 2022
- ...family of optimation algorithms for species tree inference implemented in C++ (including ASTRAL-Pro & Weighted ASTRAL).2 KB (267 words) - 17:50, 28 August 2023
- ...t provides functions for manipulating Unicode strings and for manipulating C strings according to the Unicode standard.2 KB (269 words) - 15:49, 10 June 2022
- IGoR is a C++ software designed to infer V(D)J recombination related processes from seq2 KB (271 words) - 13:52, 14 May 2020
- ...s.biomedcentral.com/articles/10.1186/s12920-018-0342-1 Tony Kuo and Martin C Frith and Jun Sese and Paul Horton. EAGLE: Explicit Alternative Genome Like2 KB (270 words) - 22:30, 26 August 2020
- QT is a cross-platform application and UI framework for developers using C++ or QML, a CSS & JavaScript like language.2 KB (257 words) - 20:57, 21 August 2022
- ...oup.com/bioinformatics/article/31/16/2741/321286 Marghoob Mohiyuddin, John C. Mu, Jian Li, Narges Bani Asadi, Mark B. Gerstein, Alexej Abyzov, Wing H. W2 KB (277 words) - 21:21, 6 December 2019
- IMa2p is a parallel implementation of IMa2, using OpenMPI-C++ - a Bayesian MCMC based method for inferring population demography under2 KB (277 words) - 21:21, 6 December 2019
- C. Than, D. Ruths, L. Nakhleh (2008) PhyloNet: A software package for analyzi2 KB (263 words) - 21:23, 6 December 2019
- ...(MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library.2 KB (272 words) - 17:11, 15 August 2022
- ...ead-safe, but, unlike MPFUN2020, is available with both a Fortran-90 and a C++ high-level interface.2 KB (271 words) - 17:47, 15 August 2022
- Savojardo C., Martelli P.L., Fariselli P., Casadio R. DeepSig: deep learning improves s2 KB (266 words) - 04:24, 6 December 2022
- |{{#vardefine:app|netcdf-c}}2 KB (278 words) - 14:47, 19 August 2022
- ...finding genomic targets for microRNAs. This algorithm has been written in C and is available as an open-source method under the GPL. MiRanda was develo2 KB (278 words) - 21:21, 6 December 2019
- ...both functional and imperative paradigms. Rust is syntactically similar to C++, but its designers intend it to provide better memory safety while still2 KB (285 words) - 21:24, 6 December 2019
- The ECMWF GRIB API is an application program interface accessible from C,2 KB (278 words) - 17:22, 15 August 2022
- FastSpar is a c++ implementation of the SparCC algorithm published here: Friedman, J. & Alm2 KB (283 words) - 15:26, 15 August 2022
- ...ble programs as well as several data structures and modules callable via a C API.2 KB (287 words) - 16:31, 10 June 2022
- SNeP is a piece of software written in C++ that performs historical Effective Population Size (Ne) trajectories esti2 KB (278 words) - 16:23, 10 June 2022
- 1) a C library for units of physical quantities.2 KB (279 words) - 17:17, 22 August 2022
- rMATS turbo is the C/Cython version of rMATS (refer to http://rnaseq-mats.sourceforge.net). The2 KB (289 words) - 19:26, 2 June 2022
- The gflags package contains a C++ library that implements commandline flags processing. It includes built-i2 KB (291 words) - 17:07, 15 August 2022
- rMATS turbo is the C/Cython version of rMATS (refer2 KB (292 words) - 18:14, 8 March 2022
- and reliable geometric algorithms in the form of a C++ library.The Computational2 KB (293 words) - 15:32, 6 June 2022
- **<pre>gui start -e gv -c 1 -m 8 -t 4</pre>2 KB (341 words) - 19:17, 25 January 2023
- ...i.nlm.nih.gov/pmc/articles/PMC5848618/ Tardaguila M, de la Fuente L, Marti C, et al. SQANTI: extensive characterization of long-read transcript sequence2 KB (290 words) - 20:35, 27 May 2022
- ...plete Genomics data. The focus is to provide command line utilities, but a C++ API is available as well. The general areas of functionality include geno2 KB (291 words) - 13:26, 15 August 2022
- Blitz++ is a C++ class library for scientific computing which provides performance on par3 KB (303 words) - 21:19, 6 December 2019
- ...rver. For edge deployments, Triton is available as a shared library with a C API that allows the full functionality of Triton to be included directly in2 KB (298 words) - 20:06, 21 August 2022
- CFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexibl2 KB (291 words) - 13:26, 15 August 2022
- Bgenix is a reference implementation of the BGEN format, written in C++. The library can be used as the basis for BGEN support in other software,2 KB (291 words) - 12:52, 15 August 2022
- NCBI C++ Toolkit provides free, portable, public domain libraries with no restrict3 KB (306 words) - 14:25, 19 August 2022
- ..., J.; Miller, I.; Baxa, J.; Lopera, J.; Kerby, R. L.; Rey, F. E.; Kwan, J. C. Autometa: Automated extraction of microbial genomes from individual shotgu3 KB (300 words) - 21:19, 6 December 2019
- ...and genotype frequencies from nucleotide read quartets (read counts of A, C, G, and T) derived from individual high-throughput sequencing data for mult2 KB (280 words) - 16:45, 10 June 2022
- ...plementation of Microsoft's .NET Framework based on the ECMA standards for C# and the Common Language Runtime. A growing family of solutions and an acti2 KB (289 words) - 17:41, 15 August 2022
- Sputnik is a C language program that searches dna sequence files in Fasta format for micro2 KB (311 words) - 15:50, 22 August 2022
- PhiSpy is a computer program written in C++, Python and R to identify prophages in a complete bacterial genome sequen2 KB (291 words) - 21:23, 6 December 2019
- C++ and is open source.3 KB (302 words) - 16:49, 10 June 2022
- BamTools is a project that provides both a C++ API and a command-line toolkit for reading, writing, and manipulating BAM2 KB (289 words) - 18:02, 12 August 2022
- James C. Phillips, Rosemary Braun, Wei Wang, James Gumbart, Emad Tajkhorshid, Eliza2 KB (245 words) - 13:45, 19 August 2022
- Chan chan PRINSEQ++ is a C++ implementation of the prinseq-lite.pl program. It can be used to filter,2 KB (298 words) - 18:11, 15 April 2020
- **<pre>ssh-keygen -o -a 100 -t ed25519 -f ~/.ssh/id_ed25519 -C "Comment to make the key recognizable among many"</pre> **<pre>ssh-keygen -t ed25519 -C "Comment to make the key recognizable among many"</pre>5 KB (897 words) - 21:45, 8 February 2024
- [https://www.nature.com/articles/ncomms14061 Jeffares, Daniel C; Jolly, Clemency; Hoti, Mimoza; Speed, Doug; Shaw, Liam; Rallis, Charalampo3 KB (296 words) - 21:24, 6 December 2019
- ...ls (MSMs). It is primarily written in the python programming language with C extensions for the most time consuming routines. MSMs are a powerful means2 KB (288 words) - 16:38, 10 June 2022
- Baron RV, Kollar C, Mukhopadhyay N, Weeks DE (2014) Mega2: validated data-reformatting for lin3 KB (310 words) - 21:21, 6 December 2019
- The MPFR library is a C library for multiple-precision floating-point computations with correct rou2 KB (302 words) - 21:22, 6 December 2019
- Written in C++ and built on the Armadillo linear algebra library, the ensmallen numerica3 KB (301 words) - 19:43, 15 December 2020
- [https://www.ncbi.nlm.nih.gov/pubmed/29718191 Oh, M., Pruden, A., Chen, C., Heath, L. S., Xia, K., & Zhang, L. (2018). MetaCompare: A computational p3 KB (304 words) - 21:21, 6 December 2019
- Smith, S. A. and Dunn, C. W. (2008) Phyutility: a phyloinformatics tool for trees, alignments, and m2 KB (296 words) - 20:22, 12 August 2022
- ...models into efficient finite element code. With the high-level Python and C++ interfaces to FEniCS, it is easy to get started, but FEniCS offers also p3 KB (301 words) - 21:20, 6 December 2019
- isONclust2 is implemented in C++, which makes it fast enough to cluster large transcriptomic datasets prod3 KB (303 words) - 15:23, 28 October 2022
- Mitsuba 2 is a research-oriented rendering system written in portable C++17. It consists of a small set of core libraries and a wide variety of plu3 KB (302 words) - 20:45, 18 August 2022
- ...ult to use? In G. Bertorelle, M. W. Bruford, H. C. Hauffe, A. Rizzoli, and C. Vernesi, editors, Population Genetics for Animal Conservation, volume 17 o5 KB (636 words) - 16:05, 22 December 2022
- ...aramillo, R. Gomperts, R. E. Stratmann, O. Yazyev, A. J. Austin, R. Cammi, C. Pomelli, J. W. Ochterski, R. L. Martin, K. Morokuma, V. G. Zakrzewski, G.6 KB (918 words) - 14:39, 8 March 2023
- ...1/1755-0998.12399/abstract Bengtsson-Palme J, Hartmann M, Eriksson KM, Pal C, Thorell K, Larsson DGJ, Nilsson RH: Metaxa2: Improved Identification and T3 KB (300 words) - 19:29, 18 August 2022
- LZO is a portable lossless data compression library written in ANSI C.3 KB (317 words) - 20:38, 10 June 2022
- ...' (or '''B'''iosynthetic '''G'''ene clusters - '''S'''uper '''Li'''near '''C'''lustering '''E'''ngine) is a tool designed to cluster massive numbers of3 KB (295 words) - 21:25, 14 September 2023
- AD Model Builder, or ADMB, is a C++ application which implements AD using specialized classes and operator ov3 KB (302 words) - 20:49, 11 August 2022
- software. The current version provides a complete BLAS API (for both C and3 KB (317 words) - 15:19, 12 August 2022
- ...reconstruction of ancestral sequences. It consists of over 60,000 lines of C code.3 KB (320 words) - 17:17, 10 June 2022
- ...aMiner must be present in your configure.txt file (which is passed by the -c option when you run decontaMiner.sh). In order to use the pre-loaded tools3 KB (321 words) - 14:56, 2 March 2021
- ...solid tissues, including tumors. TRUST4 performs de novo assembly on V, J, C genes including the hypervariable complementarity-determining region 3 (CDR3 KB (314 words) - 20:12, 8 February 2021
- ControlPath ~/.ssh/control/%C2 KB (342 words) - 13:40, 26 June 2023
- ...est.github.io/papers/BursteddeWilcoxGhattas11.pdf Carsten Burstedde, Lucas C. Wilcox, and Omar Ghattas, p4est: Scalable Algorithms for Parallel Adaptive3 KB (320 words) - 17:24, 10 June 2022
- ...formatics/article/36/17/4658/5861530 César Piñeiro, José M. Abuín and Juan C. Pichel. Bioinformatics, vol. 36, no. 17, pages 4658-4659, 2020.]3 KB (329 words) - 21:03, 12 February 2021
- ...ology 2014, and Evolution 2015). BAMM is a command line program written in C++. Post-run analysis and visualization is performed using the R package BAM3 KB (322 words) - 18:00, 12 August 2022