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  • ...n-us/intel-parallel-studio-xe Intel Compiler Suite] provides Fortran and C/C++ compilers and is preferred compiler option on hipergator. The [https://gcc.gnu.org GNU Compiler Suite] provides Fortran and C/C++ compilers.
    1 KB (159 words) - 22:30, 26 July 2021
  • mpicc ( C source) mpiCC (C++ source)
    3 KB (291 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:library]][[Category:development]][[Category:C++]][[Category:python]] ...the 'glue code' required for the above target languages to call into the C/C++ code. SWIG can also export its parse tree in the form of XML and Lisp s-e
    3 KB (416 words) - 21:24, 6 December 2019
  • ...the 'glue code' required for the above target languages to call into the C/C++ code. SWIG can also export its parse tree in the form of XML and Lisp s-e
    3 KB (400 words) - 21:29, 6 December 2019
  • ...ng dilution Hi-C, in situ Hi-C, DNase Hi-C, Micro-C, capture-C, capture Hi-C or HiChip data. ..., Heard E., Barillot E. HiC-Pro: An optimized and flexible pipeline for Hi-C processing. Genome Biology 2015, 16:259 doi:10.1186/s13059-015-0831-x
    3 KB (426 words) - 16:41, 28 June 2021
  • "Boost provides free peer-reviewed portable C++ source libraries. We emphasize libraries that work well with the C++ Standard Library. Boost libraries are intended to be widely useful, and u
    3 KB (346 words) - 21:05, 6 December 2019
  • sander -O -i amber.in -o amber.log -p amber.prmtop -c amber.inpcrd mpiexec sander.MPI -O -i amber.in -o amber.log -p amber.prmtop -c amber.inpcrd
    1 KB (167 words) - 17:38, 26 June 2017
  • |{{#vardefine:url|http://xerces.apache.org/#xerces-c}} ...or parsing, generating, manipulating, and validating XML documents. Xerces-C++ is faithful to the XML 1.0 and 1.1 recommendations and many associated st
    3 KB (306 words) - 21:29, 6 December 2019
  • ...n rates from population genetic data. The package is available either as C/C++ source code.
    3 KB (294 words) - 21:21, 6 December 2019
  • ...ython interface provides a high-level yet efficient API to use most of the C++ interface with ease.
    3 KB (324 words) - 21:00, 6 December 2019
  • ...stq raw data files and command line tools for feature annotation on the Hi-C maps.
    2 KB (275 words) - 21:22, 6 December 2019
  • The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, Ada, and Go, as well as libraries for these languages (libs
    3 KB (300 words) - 21:20, 6 December 2019
  • annotated C++ sources, but it also supports other popular programming languages such as C, Objective-C, C#, PHP, Java, Python, IDL (Corba and
    3 KB (399 words) - 21:20, 6 December 2019
  • Intel® Cluster Studio features the acclaimed Intel Fortran and C++ Compilers. These performance-oriented compilers can deliver a remarkable Intel Compilers support OpenMP. Developers using C or C++ can create and manage portable, shared-memory parallelism in their applic
    3 KB (327 words) - 21:21, 6 December 2019
  • ...e, G. D., Hunagel, D. E., Lei, J., Achawanantakun, R., Jiao, D., Lawrence, C. J., Ware, D., Shiu, S-H., Childs, K. L., Sun, Y., Jiang, N, Yandell, M. 20
    3 KB (329 words) - 21:22, 6 December 2019
  • | C || icc || ''icc compiler_options example.c'' | C++ || icpc || ''icpc compiler_options -o example.exe example.cxx''
    5 KB (656 words) - 16:48, 13 November 2017
  • ...ing machine learning algorithms and tools for creating complex software in C++ to solve real world problems. See http://dlib.net for the main project do
    2 KB (269 words) - 13:11, 4 May 2020
  • Armadillo is a high quality C++ linear algebra library, aiming towards a good balance between speed and e ...://arma.sourceforge.net/armadillo_nicta_2010.pdf Armadillo: An Open Source C++ Linear Algebra Library for Fast Prototyping and Computationally Intensive
    2 KB (263 words) - 21:19, 6 December 2019
  • A tool to scaffold long read assemblies with Hi-C Ghurye, J., Pop, M., Koren, S., Bickhart, D., & Chin, C. S. (2017). Scaffolding of long read assemblies using long range contact in
    2 KB (266 words) - 21:24, 6 December 2019
  • ...s and has a rich ecosystem of extensions for other languages (such as C++, C#, Java, Python, PHP, Go) and runtimes (such as .NET and Unity).
    2 KB (287 words) - 21:29, 6 December 2019
  • ...e that the Fortran module man not have all supporting binaries that netcdf-c module has.
    3 KB (379 words) - 20:27, 2 August 2021
  • Hi-C scaffolding tool to assemble contigs/scaffolds into complete chromosomes ...Valsecchi, Sarah Toscano, Laura Arrigoni, Fidel Ramirez, Asifa Akhtar. "Hi-C guided assemblies reveal conserved regulatory topologies on X and autosomes
    2 KB (282 words) - 14:23, 21 October 2020
  • ...marsh, P. N. Brown, K. E. Grant, S. L. Lee, R. Serban, D. E. Shumaker, and C. S. Woodward, "SUNDIALS: Suite of Nonlinear and Differential/Algebraic Equa * R. Serban and A. C. Hindmarsh, "CVODES: the Sensitivity-Enabled ODE Solver in SUNDIALS," Proce
    3 KB (356 words) - 21:31, 6 December 2019
  • ...ry for astrophysical simulations and models. Grackle has interfaces for C, C++, Fortran, and Python codes and provides:
    2 KB (290 words) - 22:15, 27 August 2020
  • The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. It is free software under the GNU General
    2 KB (280 words) - 21:31, 6 December 2019
  • BERTopic is a topic modeling technique that leverages transformers and c-TF-IDF to create dense clusters allowing for easily interpretable topics wh [https://zenodo.org/record/4719700 BERTopic: Leveraging BERT and c-TF-IDF to create easily interpretable topics.]
    2 KB (282 words) - 17:35, 25 May 2021
  • J. A. Anderson, C. D. Lorenz, and A. Travesset. General purpose molecular dynamics simulation ...D. Nguyen, J. A. Anderson, P. Liu, F. Spiga, J. A. Millan, D. C. Morse, S. C. Glotzer. Strong scaling of general-purpose molecular dynamics simulations
    5 KB (603 words) - 21:21, 6 December 2019
  • ...re (C), MagickWand (C), ChMagick (Ch), ImageMagickObject (COM+), Magick++ (C++), JMagick (Java), L-Magick (Lisp), Lua, NMagick (Neko/haXe), Magick.NET (
    3 KB (375 words) - 21:22, 6 December 2019
  • PLINK/SEQ is an open-source C/C++ library for working with human genetic variation data. The specific focus
    2 KB (296 words) - 21:22, 6 December 2019
  • vcflib is a simple C++ library for parsing and manipulating VCF files. This library provides a simple API to map each VCF record into a C++ class. See included applications for example usage.
    2 KB (285 words) - 21:29, 6 December 2019
  • ...des several hundreds of computer vision algorithms. Written in optimized C/C++, the library can take advantage of multi-core processing. Enabled with Op
    2 KB (283 words) - 21:31, 6 December 2019
  • PLINK/SEQ is an open-source C/C++ library for working with human genetic variation data. The specific focus
    2 KB (288 words) - 21:22, 6 December 2019
  • ...te (JTS). As such, it aims to contain the complete functionality of JTS in C++. This includes all the ​OpenGIS Simple Features for SQL spatial predica
    3 KB (306 words) - 04:31, 24 March 2021
  • ...olkit for performance analysis of parallel programs written in Fortran, C, C++, UPC, Java, Python. ...methods, basic blocks, and statements as well as event-based sampling. All C++ language features are supported including templates and namespaces. The A
    4 KB (445 words) - 21:29, 6 December 2019
  • ...orage and worklist servers. DCMTK is is written in a mixture of ANSI C and C++. It comes in complete source code and is made available as "open source"
    3 KB (299 words) - 21:21, 6 December 2019
  • ...ary fully written from scratch in pure ANSI C. It is designed to offer for C programmers common data structures with powerful algorithms, and hidden imp
    3 KB (305 words) - 22:06, 27 August 2020
  • ...olkit for performance analysis of parallel programs written in Fortran, C, C++, Java, Python. ...h instrumentation of functions, methods, basic blocks, and statements. All C++ language features are supported including templates and namespaces. The A
    4 KB (575 words) - 21:31, 6 December 2019
  • ...liquid, solid, or gaseous state. It is a open source software, written in C++ and developed at Sandia laboratory. It can be used to model atomic, polym ...CMAKE_INSTALL_PREFIX=<target_lammps_dir> -C ../cmake/presets/all_on.cmake -C ../cmake/presets/nolib.cmake ../cmake
    3 KB (467 words) - 23:34, 20 August 2021
  • Hoffmann S, Otto C, Kurtz S, Sharma CM, Khaitovich P, Vogel J, Stadler PF, Hackermueller J: "F Hoffmann S, Otto C, Doose G, Tanzer A, Langenberger D, Christ S, Kunz M, Holdt L, Teupser D, H
    3 KB (404 words) - 21:24, 6 December 2019
  • * C * C++
    3 KB (323 words) - 21:21, 6 December 2019
  • ...evelopers can launch compute kernels written using a limited subset of the C programming language on a GPU. ...wget -q https://raw.github.com/smistad/OpenCL-Getting-Started/master/main.c
    3 KB (358 words) - 21:22, 6 December 2019
  • Dohm JC, Lottaz C, Borodina T, Himmelbauer H SHARCGS, a fast and highly accurate short-read a Dohm JC, Lottaz C, Borodina T, Himmelbauer H Substantial biases in ultra-short read data sets
    3 KB (314 words) - 21:24, 6 December 2019
  • ...n: Dudchenko et al., De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds. Science, 2017. ...A.P., et al. (2017). De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds. Science eaal3327. Published online ahea
    3 KB (326 words) - 21:10, 6 December 2019
  • ...le, D. E.; Vega Thurber, R. L.; Knight, R.; Beiko, R. G.; and Huttenhower, C. Nature Biotechnology, 1-10. 8 2013.]
    3 KB (342 words) - 21:22, 6 December 2019
  • [[Category:Software]][[Category:library]][[Category:c++]] The Succinct Data Structure Library (SDSL) is a powerful and flexible C++11 library implementing succinct data structures. In total, the library co
    3 KB (350 words) - 21:24, 6 December 2019
  • maqindex -i -c consensus.cns all.map; maqview -c consensus.cns all.map
    3 KB (367 words) - 21:21, 6 December 2019
  • ...rnals.org/content/early/2014/10/22/bioinformatics.btu704.short Fuchsberger C, Abecasis GR, Hinds DA. minimac2: faster genotype imputation. Bioinformatic Howie B, Fuchsberger C, Stephens M, Marchini J, and Abecasis GR. Fast and accurate genotype imputa
    3 KB (332 words) - 21:22, 6 December 2019
  • ...many useful tools for analyzing ChIP-Seq, GRO-Seq, RNA-Seq, DNase-Seq, Hi-C and numerous other types of functional genomics sequencing data sets.
    3 KB (325 words) - 21:21, 6 December 2019
  • BioLite is a bioinformatics framework written in Python/C++ that automates the collection and reporting of diagnostics, tracks proven * A C++ library 'seqio' for efficient I/O of large NGS data files
    3 KB (363 words) - 21:20, 6 December 2019
  • .... Moriarty, R. Oeffner, R. J. Read, D. C. Richardson, J. S. Richardson, T. C. Terwilliger and P. H. Zwart. Acta Cryst. D66, 213-221 (2010).
    3 KB (320 words) - 21:22, 6 December 2019
  • ...Elastix, making it available in languages like C++, Python, Java, R, Ruby, C# and Lua.
    3 KB (366 words) - 13:41, 6 April 2020
  • ...J., Lugo C. S. B., Elliott T. A., Ware D., Peterson T., Jiang N.✉, Hirsch C. N.✉ and Hufford M. B.✉ (2019). Benchmarking Transposable Element Annot
    3 KB (357 words) - 22:32, 26 August 2020
  • ===cuda_bm.c=== {{#fileAnchor: cuda_bm.c}}
    11 KB (1,462 words) - 20:33, 21 June 2017
  • [http://mbe.oxfordjournals.org/content/24/2/412.abstract?etoc C. Ané, B. Larget, D.A. Baum, S.D. Smith, A. Rokas (2007). Bayesian estimati ...l.pdf?ijkey=BIwQBlPEqeEiojQ&keytype=ref B. Larget, S.K. Kotha, C.N. Dewey, C. Ané (2010). BUCKy: Gene tree / species tree reconciliation with the Bayes
    3 KB (384 words) - 21:06, 6 December 2019
  • Mamba is a reimplementation of the conda package manager in C++. core parts of mamba are implemented in C++ for maximum efficiency
    3 KB (432 words) - 15:06, 19 July 2021
  • ...orBoard 2.4.0 at '''<nowiki>http://localhost:6006/</nowiki>''' (Press CTRL-C to quit)
    1 KB (184 words) - 18:18, 20 January 2022
  • Edgar, Robert C. - Search and clustering orders of magnitude faster than BLAST Author : Edgar, Robert C.
    4 KB (535 words) - 21:29, 6 December 2019
  • VBScript, VBA, JavaScript, .NET (C#/VB), Java, JSP, C++, PHP, Perl, Python,
    3 KB (392 words) - 21:17, 6 December 2019
  • [1] H. Wang, J. W. Suh, S. Das, J. Pluta, C. Craige, P. Yushkevich, "Multi-atlas segmentation [2] H. Wang, S. R. Das, J. W. Suh, M. Altinay, J. Pluta, C. Craige, B. B. Avants, and P. A. Yushkevich,
    3 KB (394 words) - 16:48, 25 October 2021
  • "/drives/c/Program Files/Xpra/Xpra" "$@"
    2 KB (300 words) - 17:27, 30 July 2019
  • ssh-keygen -o -a 100 -t ed25519 -f ~/.ssh/id_ed25519 -C "Comment to make the key recognizable among many" ssh-keygen -o -a 100 -t ed25519 -f ~/.ssh/id_ed25519 -C "Comment to make the key recognizable among many"
    3 KB (563 words) - 14:30, 14 May 2021
  • [ref2] J. C. Thomas, A. Van der Ven, Finite-temperature properties of strongly anharmon [ref4] A. Van der Ven, J. C. Thomas, Q. Xu, J. Bhattacharya “Linking the electronic structure of soli
    4 KB (452 words) - 21:11, 6 December 2019
  • ...ckert, E. Goll, C. Hampel, A. Hesselmann, G. Hetzer, T. Hrenar, G. Jansen, C. Köppl, Y. Liu, A. W. Lloyd, R. A. Mata, A. J. May, S. J. McNicholas, W. M
    3 KB (472 words) - 21:22, 6 December 2019
  • ...Cheatham, III, T. Darden, H. Gohlke, R. Luo, K.M. Merz, Jr., A. Onufriev, C. Simmerling, B. Wang and R. Woods. The Amber biomolecular simulation progra ...-J. Hsieh, G. Cui, D.R. Roe, D.H. Mathews, M.G. Seetin, R. Salomon-Ferrer, C. Sagui, V. Babin, T. Luchko, S. Gusarov, A. Kovalenko, and P.A. Kollman (20
    5 KB (758 words) - 21:16, 6 December 2019
  • James C. Phillips, Rosemary Braun, Wei Wang, James Gumbart, Emad Tajkhorshid, Eliza
    2 KB (249 words) - 17:04, 6 September 2017
  • Fastest Fourier Transform in the West, is a C library for computing the Discrete Fourier Transform (DFT) in one or more d
    2 KB (219 words) - 20:27, 2 August 2021
  • ...eate as many terminal windows in the screen session as needed with 'Ctrl+a c' key combination. See [[Screen]] documentation. Ctrl+a c
    4 KB (701 words) - 15:51, 9 July 2020
  • Validation suite for Variant Call Format (VCF) files, implemented using C++11
    2 KB (247 words) - 21:29, 6 December 2019
  • ...arch Computing. To run CellProfiler in batch mode, you should include the -c or --run-headless option. Also, you want to use CELLPROFILER_USE_XVFB="1" -c, --run-headless Run headless (without the GUI)
    7 KB (869 words) - 21:12, 6 December 2019
  • ...loped by Facebook AI Research Lab and has interfaces for Python, Java, and C++, but is most commonly used with Python. It supports training on both GPU ...-GPU and distributed training. APIs are available for Python, Java, Go and C++. See our [[TensorFlow|TensorFlow quickstart page]] for help getting start
    4 KB (607 words) - 00:34, 26 October 2021
  • SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.
    2 KB (247 words) - 17:47, 22 September 2021
  • OpenSlide is a C library that provides a simple interface to read whole-slide images
    2 KB (248 words) - 21:22, 6 December 2019
  • Widely used C++ template library for task parallelism.
    2 KB (259 words) - 21:29, 6 December 2019
  • TALESF is a C library for identifying potential binding sites for transcription activator
    2 KB (256 words) - 21:29, 6 December 2019
  • ...e fast all-in-one preprocessing for FastQ files. This tool is developed in C++ with multithreading supported to afford high performance.
    2 KB (254 words) - 21:20, 6 December 2019
  • Mach2VCF is a C++ tool to convert MaCH files to VCF files.
    2 KB (242 words) - 21:22, 6 December 2019
  • C++ library and its applications to generate and process accurate consensus s
    2 KB (266 words) - 21:29, 6 December 2019
  • C++ implementation of the Google logging module
    2 KB (269 words) - 21:21, 6 December 2019
  • Networks. It is a C++ template library providing efficient implementations
    2 KB (266 words) - 21:21, 6 December 2019
  • DosageConvertor is a C++ tool to convert dosage files (in VCF format) from Minimac3 to ther format
    2 KB (254 words) - 21:21, 6 December 2019
  • The Nexus Class Library (NCL) is a C++ library for interpreting data files created according to the NEXUS file f
    2 KB (253 words) - 21:22, 6 December 2019
  • ..., thanks to an easy and fast scripting language, LuaJIT, and an underlying C/CUDA implementation.
    2 KB (251 words) - 21:29, 6 December 2019
  • ...1/2/3 specification and exposes an API which grounds on the standard MPI-2 C++ bindings.
    2 KB (268 words) - 21:22, 6 December 2019
  • IGoR is a C++ software designed to infer V(D)J recombination related processes from seq
    2 KB (271 words) - 13:52, 14 May 2020
  • ...s.biomedcentral.com/articles/10.1186/s12920-018-0342-1 Tony Kuo and Martin C Frith and Jun Sese and Paul Horton. EAGLE: Explicit Alternative Genome Like
    2 KB (270 words) - 22:30, 26 August 2020
  • ...oup.com/bioinformatics/article/31/16/2741/321286 Marghoob Mohiyuddin, John C. Mu, Jian Li, Narges Bani Asadi, Mark B. Gerstein, Alexej Abyzov, Wing H. W
    2 KB (277 words) - 21:21, 6 December 2019
  • IMa2p is a parallel implementation of IMa2, using OpenMPI-C++ - a Bayesian MCMC based method for inferring population demography under
    2 KB (277 words) - 21:21, 6 December 2019
  • QT is a cross-platform application and UI framework for developers using C++ or QML, a CSS & JavaScript like language.
    2 KB (250 words) - 21:31, 6 December 2019
  • C. Than, D. Ruths, L. Nakhleh (2008) PhyloNet: A software package for analyzi
    2 KB (263 words) - 21:23, 6 December 2019
  • The ECMWF GRIB API is an application program interface accessible from C,
    2 KB (274 words) - 21:21, 6 December 2019
  • The Nexus Class Library (NCL) is a C++ library for interpreting data files created according to the NEXUS file f
    2 KB (283 words) - 21:23, 6 December 2019
  • ...finding genomic targets for microRNAs. This algorithm has been written in C and is available as an open-source method under the GPL. MiRanda was develo
    2 KB (278 words) - 21:21, 6 December 2019
  • |{{#vardefine:app|netcdf-c}}
    2 KB (279 words) - 04:31, 24 March 2021
  • The General Hidden Markov Model library (GHMM) is a freely available C library implementing efficient data structures and algorithms for basic and
    2 KB (285 words) - 21:20, 6 December 2019
  • ...both functional and imperative paradigms. Rust is syntactically similar to C++, but its designers intend it to provide better memory safety while still
    2 KB (285 words) - 21:24, 6 December 2019
  • ...nome informatics) combined into a single binary named gt. It is based on a C library named “libgenometools” which consists of several modules.
    2 KB (266 words) - 21:21, 6 December 2019
  • ...t provides functions for manipulating Unicode strings and for manipulating C strings according to the Unicode standard.
    2 KB (267 words) - 21:21, 6 December 2019
  • gui start -e gv -c 1 -m 8 -t 4 ...aramillo, R. Gomperts, R. E. Stratmann, O. Yazyev, A. J. Austin, R. Cammi, C. Pomelli, J. W. Ochterski, R. L. Martin, K. Morokuma, V. G. Zakrzewski, G.
    7 KB (1,030 words) - 20:52, 20 January 2022
  • Gursoy D, De Carlo F, Xiao X and Jacobsen, C. (2014). J. Synchrotron Rad. 21, doi:10.1107/S1600577514013939
    2 KB (276 words) - 21:29, 6 December 2019
  • [[Category:Software]][[Category:C++]]
    2 KB (288 words) - 21:01, 6 December 2019

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