Difference between revisions of "SparCC"
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(Created page with "__NOTOC__ __NOEDITSECTION__ Category:SoftwareCategory:Microbial Ecology {|<!--Main settings - REQUIRED--> |{{#vardefine:app|SparCC}} |{{#vardefine:url|https://bitbucke...") |
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===Serial=== | ===Serial=== | ||
*python | *python | ||
| − | + | {{#lowercase:{{#var:app}}}} | |
| + | |||
==System Variables== | ==System Variables== | ||
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | * HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | ||
| − | * | + | * HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory |
| − | * | + | * HPC_{{#uppercase:{{#var:app}}}}_LIB - documents directory |
{{#if: {{#var: exe}}|==How To Run== | {{#if: {{#var: exe}}|==How To Run== | ||
'''Note:''' If your data is compressed your job script should add another ppn to accommodate the external gzip process tophat will run. To be safe, add another ppn in any case. | '''Note:''' If your data is compressed your job script should add another ppn to accommodate the external gzip process tophat will run. To be safe, add another ppn in any case. | ||
Revision as of 16:11, 10 February 2014
Description
SparCC is mainly used for calculating correlations in compositional data. It can also be used to calculate sample diversity, rank abundance plots, etc.
Required Modules
Serial
- python
{{#lowercase:SparCC}}
System Variables
- HPC_{{#uppercase:SparCC}}_DIR - installation directory
- HPC_{{#uppercase:SparCC}}_BIN - executable directory
- HPC_{{#uppercase:SparCC}}_LIB - documents directory