SnpEff Databases
Revision as of 18:32, 2 August 2021 by Moskalenko (talk | contribs)
List of installed SnpEff databases for the current default snpEff version, which is loaded with 'module load snpeff'.
| Genome |
|---|
| 3.0.29 |
| Escherichia_coli_LF82_uid161965 |
| Escherichia_coli_LY180_uid219461 |
| Escherichia_coli_NA114_uid162139 |
| Escherichia_coli_O103_H2_12009_uid41013 |
| Escherichia_coli_O104_H4_2009EL_2050_uid175905 |
| Escherichia_coli_O104_H4_2009EL_2071_uid176128 |
| Escherichia_coli_O104_H4_2011C_3493_uid176127 |
| Escherichia_coli_O111_H__11128_uid41023 |
| Escherichia_coli_O127_H6_E2348_69_uid59343 |
| Escherichia_coli_O157_H7_EC4115_uid59091 |
| Escherichia_coli_O157_H7_EDL933_uid57831 |
| Escherichia_coli_O157_H7_TW14359_uid59235 |
| Escherichia_coli_O157_H7_uid57781 |
| Escherichia_coli_O26_H11_11368_uid41021 |
| Escherichia_coli_O55_H7_CB9615_uid46655 |
| Escherichia_coli_O55_H7_RM12579_uid162153 |
| Escherichia_coli_O7_K1_CE10_uid162115 |
| Escherichia_coli_O83_H1_NRG_857C_uid161987 |
| Escherichia_coli_P12b_uid162061 |
| Escherichia_coli_PMV_1_uid219679 |
| Escherichia_coli_S88_uid62979 |
| Escherichia_coli_SE11_uid59425 |
| Escherichia_coli_SE15_uid161939 |
| Escherichia_coli_SMS_3_5_uid58919 |
| Escherichia_coli_UM146_uid162043 |
| Escherichia_coli_UMN026_uid62981 |
| Escherichia_coli_UMNK88_uid161991 |
| Escherichia_coli_UTI89_uid58541 |
| Escherichia_coli_W_uid162011 |
| Escherichia_coli_W_uid162101 |
| Escherichia_coli_Xuzhou21_uid163995 |
| Escherichia_fergusonii_ATCC_35469_uid59375 |
| Ethanoligenens_harbinense_YUAN_3_uid46255 |
| Eubacterium_cylindroides_T2_87_uid197177 |
| Eubacterium_eligens_ATCC_27750_uid59171 |
| Eubacterium_limosum_KIST612_uid59777 |
| Eubacterium_rectale_ATCC_33656_uid59169 |
| Eubacterium_rectale_uid197161 |
| Eubacterium_rectale_uid197162 |
| Eubacterium_siraeum_uid197160 |
| Eubacterium_siraeum_V10Sc8a_uid197178 |
| Exiguobacterium_antarcticum_B7_uid176125 |
| Exiguobacterium_AT1b_uid59093 |
| Exiguobacterium_MH3_uid227425 |
| Exiguobacterium_sibiricum_255_15_uid58053 |
| Faecalibacterium_prausnitzii_L2_6_uid197183 |
| Faecalibacterium_prausnitzii_uid197157 |
| Ferrimonas_balearica_DSM_9799_uid53371 |
| Ferroglobus_placidus_DSM_10642_uid40863 |
| Ferroplasma_acidarmanus_fer1_uid54095 |
| Fervidicoccus_fontis_Kam940_uid162201 |
| Fervidobacterium_nodosum_Rt17_B1_uid58625 |
| Fervidobacterium_pennivorans_DSM_9078_uid78143 |
| Fibrella_aestuarina_uid178352 |
| Fibrobacter_succinogenes_S85_uid161919 |
| Fibrobacter_succinogenes_S85_uid41169 |
| Filifactor_alocis_ATCC_35896_uid46625 |
| Finegoldia_magna_ATCC_29328_uid58867 |
| Flavobacteriaceae_bacterium_3519_10_uid59413 |
| Flavobacteriales_bacterium_HTCC2170_uid51877 |
| Flavobacterium_branchiophilum_FL_15_uid73421 |
| Flavobacterium_columnare_ATCC_49512_uid80731 |
| Flavobacterium_indicum_GPTSA100_9_uid157999 |
| Flavobacterium_johnsoniae_UW101_uid58493 |
| Flavobacterium_psychrophilum_JIP02_86_uid61627 |
| Flexibacter_litoralis_DSM_6794_uid168257 |
| Flexistipes_sinusarabici_DSM_4947_uid68147 |
| Fluviicola_taffensis_DSM_16823_uid65271 |
| Francisella_cf__novicida_3523_uid162107 |
| Francisella_cf__novicida_Fx1_uid162105 |
| Francisella_noatunensis_orientalis_LADL_07_285A_uid231515 |
| Francisella_noatunensis_orientalis_Toba_04_uid164779 |
| Francisella_novicida_U112_uid58499 |
| Francisella_philomiragia_ATCC_25017_uid59105 |
| Francisella_tularensis_FSC198_uid58693 |
| Francisella_tularensis_holarctica_F92_uid181998 |
| Francisella_tularensis_holarctica_FSC200_uid54341 |
| Francisella_tularensis_holarctica_FTNF002_00_uid58999 |
| Francisella_tularensis_holarctica_LVS_uid58595 |
| Francisella_tularensis_holarctica_OSU18_uid58687 |
| Francisella_tularensis_mediasiatica_FSC147_uid58939 |
| Francisella_tularensis_NE061598_uid161973 |
| Francisella_tularensis_SCHU_S4_uid57589 |
| Francisella_tularensis_TI0902_uid89373 |
| Francisella_tularensis_TIGB03_uid89379 |
| Francisella_tularensis_WY96_3418_uid58811 |
| Francisella_TX077308_uid68321 |
| Frankia_alni_ACN14a_uid58695 |
| Frankia_EAN1pec_uid58367 |
| Frankia_EuI1c_uid42615 |
| Frankia_symbiont_of_Datisca_glomerata_uid46257 |
| Frateuria_aurantia_DSM_6220_uid81775 |
| GCA_000006665.1.29 |
| GCA_000008865.1.29 |
| GCA_000010825.1.29 |
| GCA_000010845.1.29 |
| GCA_000010865.1.29 |
| GCA_000010885.1.29 |
| GCA_000010905.1.29 |
| GCA_000010925.1.29 |
| GCA_000010945.1.29 |
| GCA_000010965.1.29 |
| GCA_000015025.1.29 |
| GCA_000015325.1.29 |
| GCA_000016725.1.29 |
| GCA_000018105.1.29 |
| GCA_000018785.1.29 |
| GCA_000020825.1.29 |
| GCA_000021125.1.29 |
| GCA_000021485.1.29 |
| GCA_000022225.1.29 |
| GCA_000022305.1.29 |
| GCA_000022565.1.29 |
| GCA_000023265.1.29 |
| GCA_000024985.1.29 |
| GCA_000025305.1.29 |
| GCA_000067165.1.29 |
| GCA_000091125.1.29 |
| GCA_000143765.1.29 |
| GCA_000144695.1.29 |
| GCA_000144915.1.29 |
| GCA_000147835.3.29 |
| GCA_000155125.1.29 |
| GCA_000159515.1.29 |
| GCA_000164035.1.29 |
| GCA_000165835.1.29 |
| GCA_000171915.1.29 |
| GCA_000171935.1.29 |
| GCA_000171955.1.29 |
| GCA_000171975.1.29 |
| GCA_000171995.1.29 |
| GCA_000172015.1.29 |
| GCA_000172035.1.29 |
| GCA_000172055.1.29 |
| GCA_000174215.1.29 |
| GCA_000175235.1.29 |
| GCA_000175575.2.29 |
| GCA_000176855.2.29 |
| GCA_000179815.2.29 |
| GCA_000181735.1.29 |
| GCA_000181755.1.29 |
| GCA_000181775.1.29 |
| GCA_000182805.2.29 |
| GCA_000186185.1.29 |
| GCA_000186945.1.29 |
| GCA_000187285.4.29 |
| GCA_000187305.2.29 |
| GCA_000187325.2.29 |
| GCA_000187385.2.29 |
| GCA_000188075.1.29 |
| GCA_000188115.2.29 |
| GCA_000190435.1.29 |
| GCA_000192845.1.29 |
| GCA_000193245.2.29 |
| GCA_000202835.1.29 |
| GCA_000208385.1.29 |
| GCA_000213215.1.29 |
| GCA_000214095.3.29 |
| GCA_000219125.2.29 |
| GCA_000219295.2.29 |
| GCA_000219745.1.29 |
| GCA_000221025.1.29 |
| GCA_000223485.1.29 |
| GCA_000225485.1.29 |
| GCA_000230275.1.29 |
| GCA_000236685.1.29 |
| GCA_000236785.2.29 |
| GCA_000241585.2.29 |
| GCA_000241625.2.29 |
| GCA_000242635.3.29 |
| GCA_000245075.1.29 |
| GCA_000247605.1.29 |
| GCA_000264945.1.29 |
| GCA_000271325.1.29 |
| GCA_000281715.1.29 |
| GCA_000286415.1.29 |
| GCA_000306035.1.29 |
| GCA_000313135.1.29 |
| GCA_000320565.2.29 |
| GCA_000382885.1.29 |
| GCA_000411395.1.29 |
| GCA_000416985.1.29 |
| GCA_000418325.1.29 |
| GCA_000421925.1.29 |
| GCA_000445065.1.29 |
| GCA_000445085.1.29 |
| GCA_000445105.1.29 |
| GCA_000445145.1.29 |
| GCA_000468835.1.29 |
| GCA_000508185.1.29 |
| GCA_000508285.1.29 |
| GCA_000517425.1.29 |
| GCA_000588875.1.29 |
| GCA_000614805.1.29 |
| GCA_000616745.1.29 |
| GCA_000617205.1.29 |
| GCA_000617585.1.29 |
| GCA_000617865.1.29 |
| GCA_000617965.1.29 |
| GCA_000617985.1.29 |
| GCA_000618025.1.29 |
| GCA_000618045.1.29 |
| GCA_000618065.1.29 |
| GCA_000618105.1.29 |
| GCA_000618145.1.29 |
| GCA_000618185.1.29 |
| GCA_000618205.1.29 |
| GCA_000618225.1.29 |
| GCA_000618245.1.29 |
| GCA_000618265.1.29 |
| GCA_000618285.1.29 |
| GCA_000618305.1.29 |
| GCA_000618325.1.29 |
| GCA_000618345.1.29 |
| GCA_000618365.1.29 |
| GCA_000618385.1.29 |
| GCA_000618425.1.29 |
| GCA_000618445.1.29 |
| GCA_000618465.1.29 |
| GCA_000618485.1.29 |
| GCA_000618505.1.29 |
| GCA_000618525.1.29 |
| GCA_000618545.1.29 |
| GCA_000618565.1.29 |
| GCA_000618585.1.29 |
| GCA_000618605.1.29 |
| GCA_000618625.1.29 |
| GCA_000618645.1.29 |
| GCA_000618665.1.29 |
| GCA_000618685.1.29 |
| GCA_000618745.1.29 |
| GCA_000618765.1.29 |
| GCA_000618785.1.29 |
| GCA_000618805.1.29 |
| GCA_000618825.1.29 |
| GCA_000618845.1.29 |
| GCA_000618865.1.29 |
| GCA_000618885.1.29 |
| GCA_000618925.1.29 |
| GCA_000619365.1.29 |
| GCA_000619385.1.29 |
| GCA_000619405.1.29 |
| GCA_000619425.1.29 |
| GCA_000619445.1.29 |
| GCA_000619685.1.29 |
| GCA_000632125.2.29 |
| GCA_000632555.1.29 |
| GCA_000632655.1.29 |
| GCA_000633575.2.29 |
| GCA_000689195.1.29 |
| GCA_000691125.1.29 |
| GCA_000722875.1.29 |
| GCA_000723785.1.29 |
| GCA_000724705.1.29 |
| GCA_000730345.1.29 |
| GCA_000732965.1.29 |
| GCA_000743655.1.29 |
| GCA_000743885.1.29 |
| GCA_000747525.1.29 |
| GCA_000755665.1.29 |
| GCA_000755675.1.29 |
| GCA_000757485.1.29 |
| GCA_000757725.1.29 |
| GCA_000758265.1.29 |
| GCA_000783435.1.29 |
| GCA_000787395.1.29 |
| GCA_000803705.1.29 |
| GCA_000827215.1.29 |
| GCA_000938735.1.29 |
| GCA_000945115.1.29 |
| GCA_000949015.1.29 |
| GCA_000949295.1.29 |
| GCA_000953195.1.29 |
| GCA_000963905.1.29 |
| GCA_000964345.1.29 |
| GCA_000964385.1.29 |
| GCA_000967095.1.29 |
| GCA_000967915.1.29 |
| GCA_000968055.1.29 |
| GCA_001005725.1.29 |
| GCA_001005835.1.29 |
| GCA_001006065.1.29 |
| GCA_001038045.1.29 |
| GRCh38.82 |
| GRCh38.p2.RefSeq |
| hg19 |
| SL2.50 |
| Sorbi1.29 |
| todo_db.txt |
| todo_db.txt.orig |
| Vibrio_EJY3_uid83161 |