Seq crumbs

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seq_crumbs website  

seq_crumbs aims to be a collection of small sequence processing utilities.

seq_crumbs is modeled after the Unix command line text processing utilities so every utility tries to perform a specific task and most of them take a sequence file as input and create a new processed sequence file as output. This design encourages the assembly of the seq_crumbs utilities with Unix pipes to create complex pipelines. There are already other similar software that uses this approach like fastx and biopieces.

Environment Modules

Run module spider seq_crumbs to find out what environment modules are available for this application.

System Variables

  • HPC_SEQ_CRUMBS_DIR - installation directory
  • HPC_SEQ_CRUMBS_BIN - executable directory