Scallop is an accurate reference-based transcript assembler. Scallop features its high accuracy in assembling multi-exon transcripts as well as lowly expressed transcripts. Scallop achieves this improvement through a novel algorithm that can be proved preserving all phasing paths from reads and paired-end reads, while also achieves both transcripts parsimony and coverage deviation minimization.
module spider scallop to find out what environment modules are available for this application.
- HPC_SCALLOP_DIR - installation directory
- HPC_SCALLOP_BIN - executable directory