SVDetect
Revision as of 15:51, 24 March 2014 by Moskalenko (talk | contribs)
Description
SVDetect is a application for the isolation and the type prediction of intra- and inter-chromosomal rearrangements from paired-end/mate-pair sequencing data provided by the high-throughput sequencing technologies
This tool aims to identifying structural variations with both clustering and sliding-window strategies, and helping in their visualization at the genome scale.
SVDetect is compatible with SOLiD and Illumina (>=1.3) reads.
The SVDetect online Manual is available.
Required Modules
Serial
- svdetect
System Variables
- HPC_{{#uppercase:svdetect}}_DIR