Difference between revisions of "SVDetect"
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The [http://svdetect.sourceforge.net/Site/Manual.html SVDetect online Manual] is available. | The [http://svdetect.sourceforge.net/Site/Manual.html SVDetect online Manual] is available. | ||
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==System Variables== | ==System Variables== | ||
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Revision as of 20:25, 10 June 2022
Description
SVDetect is a application for the isolation and the type prediction of intra- and inter-chromosomal rearrangements from paired-end/mate-pair sequencing data provided by the high-throughput sequencing technologies
This tool aims to identifying structural variations with both clustering and sliding-window strategies, and helping in their visualization at the genome scale.
SVDetect is compatible with SOLiD and Illumina (>=1.3) reads.
The SVDetect online Manual is available.
Environment Modules
Run module spider svdetect to find out what environment modules are available for this application.
System Variables
- HPC_SVDETECT_DIR - installation directory