SSR pipeline

From UFRC
Revision as of 20:46, 19 January 2016 by Maxprok (talk | contribs) (Created page with "Category:SoftwareCategory:BiologyCategory:DNA Sequencing {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|ssr_pipeline}} |{{#vardefine:url|http://pubs.usgs.gov/d...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search

Description

ssr_pipeline website  

SSR_pipeline is a flexible set of programs designed to efficiently identify simple sequence repeats (SSRs; for example, microsatellites) from paired-end high-throughput Illumina DNA sequencing data. The program suite contains three analysis modules along with a fourth control module that can be used to automate analyses of large volumes of data.

Required Modules

Serial

  • ssr_pipeline

System Variables

  • HPC_{{#uppercase:ssr_pipeline}}_DIR - installation directory




Citation

If you publish research that uses ssr_pipeline you have to cite it as follows:

Miller, M.P., Knaus, B.J., Mullins, T.D., and Haig, S.M., 2013, SSR_pipeline—Computer software for the identification of microsatellite sequences from paired-end Illumina High-Throughput DNA sequence data (ver. 1.1, February 2014): U.S. Geological Survey Data Series 778.