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sqanti3 website  

SQANTI3 is the first module of the Functional IsoTranscriptomics (FIT) framework, that also includes IsoAnnot and tappAS.

Environment Modules

Run module spider sqanti3 to find out what environment modules are available for this application.

System Variables

  • HPC_SQANTI3_DIR - installation directory
  • HPC_SQANTI3_BIN - executable directory


If you publish research that uses sqanti3 you have to cite it as follows:

Tardaguila M, de la Fuente L, Marti C, et al. SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification. Genome Res. 2018;28(3):396-411. doi:10.1101/gr.222976.117