SQANTI3 is the first module of the Functional IsoTranscriptomics (FIT) framework, that also includes IsoAnnot and tappAS.
module spider sqanti3 to find out what environment modules are available for this application.
- HPC_SQANTI3_DIR - installation directory
- HPC_SQANTI3_BIN - executable directory
If you publish research that uses sqanti3 you have to cite it as follows:
Tardaguila M, de la Fuente L, Marti C, et al. SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification. Genome Res. 2018;28(3):396-411. doi:10.1101/gr.222976.117