SQANTI
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Description
SQANTI is a pipeline for the in-depth characterization of isoforms obtained by full-length transcript sequencing, which are commonly returned in a fasta file format without any extra information about gene/transcript annotation or attribute description. SQANTI provides a wide range of descriptors of transcript quality and generates a graphical report to aid in the interpretation of the sequencing results.
Environment Modules
Run module spider sqanti to find out what environment modules are available for this application.
System Variables
- HPC_{{#uppercase:sqanti}}_DIR - installation directory
- HPC_{{#uppercase:sqanti}}_BIN - executable directory
- HPC_{{#uppercase:sqanti}}_UTI - utilities directory
- HPC_{{#uppercase:sqanti}}_DOC - documentation directory
- HPC_{{#uppercase:sqanti}}_EXE - example directory