Difference between revisions of "SPANE-pooled"

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(Created page with "Category:SoftwareCategory:biologyCategory:SNP {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|spane}} |{{#vardefine:url|https://code.google.com/archive/p/snape-...")
 
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 21:24, 6 December 2019

Description

spane website  

SNAPE-pooled computes the probability distribution for the frequency of the minor allele in a certain population, at a certain position in the genome. Obviously if this probability is high enough, then you have a segregating position, a.k.a. SNP.

Environment Modules

Run module spider spane to find out what environment modules are available for this application.

System Variables

  • HPC_SPANE_DIR - installation directory