Difference between revisions of "SPANE-pooled"

From UFRC
Jump to navigation Jump to search
m (Text replacement - "#uppercase" to "uc")
 
Line 1: Line 1:
[[Category:Software]][[Category:biology]][[Category:SNP]]
+
[[Category:Software]][[Category:biology]][[Category:Variant Calling]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|spane}}
 
|{{#vardefine:app|spane}}

Latest revision as of 12:57, 15 August 2022

Description

spane website  

SNAPE-pooled computes the probability distribution for the frequency of the minor allele in a certain population, at a certain position in the genome. Obviously if this probability is high enough, then you have a segregating position, a.k.a. SNP.

Environment Modules

Run module spider spane to find out what environment modules are available for this application.

System Variables

  • HPC_SPANE_DIR - installation directory