SOAPdenovo-Trans
Jump to navigation
Jump to search
Description
SOAPdenovo-Trans is a de novo transcriptome assembler basing on the SOAPdenovo framework, adapt to alternative splicing and different expression level among transcripts.The assembler provides a more accurate, complete and faster way to construct the full-length transcript sets.
Required Modules
Serial
- soapdenovo-trans
System Variables
- HPC_{{#uppercase:soapdenovo-trans}}_DIR - installation directory
- HPC_SOAPDENOVOTRANS_BIN - directory where SOAPdenov-Trans binaries are located
Validation
- Validated 4/5/2018