Difference between revisions of "SOAPdenovo-Trans"
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Moskalenko (talk | contribs) m (Text replace - "<!--Run-->" to "==System Variables== * HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory <!--Run--> ") |
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[[Category:Software]] | [[Category:Software]] | ||
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
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|{{#vardefine:url|http://soap.genomics.org.cn/SOAPdenovo-Trans.html}} | |{{#vardefine:url|http://soap.genomics.org.cn/SOAPdenovo-Trans.html}} | ||
<!--CONFIGURATION: OPTIONAL (1=ON)--> | <!--CONFIGURATION: OPTIONAL (1=ON)--> | ||
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|{{#vardefine:exe|}} <!--RUNNING --> | |{{#vardefine:exe|}} <!--RUNNING --> | ||
|{{#vardefine:conf|}} <!--CONFIGS--> | |{{#vardefine:conf|}} <!--CONFIGS--> | ||
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SOAPdenovo-Trans is a de novo transcriptome assembler basing on the SOAPdenovo framework, adapt to alternative splicing and different expression level among transcripts.The assembler provides a more accurate, complete and faster way to construct the full-length transcript sets. | SOAPdenovo-Trans is a de novo transcriptome assembler basing on the SOAPdenovo framework, adapt to alternative splicing and different expression level among transcripts.The assembler provides a more accurate, complete and faster way to construct the full-length transcript sets. | ||
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<!--Modules--> | <!--Modules--> | ||
− | + | ==Required Modules== | |
− | + | [[Modules|modules documentation]] | |
− | + | ===Serial=== | |
− | + | *{{#var:app}} | |
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==System Variables== | ==System Variables== | ||
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | * HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | ||
− | <!-- | + | * HPC_SOAPDENOVOTRANS_BIN - directory where SOAPdenov-Trans binaries are located |
− | + | <!--Additional--> | |
− | {{#if: {{#var: exe}}|== | + | {{#if: {{#var: exe}}|==Additional Information== |
DOUBLE_CLICK_TO_WRITE_INSTRUCTIONS_ON_RUNNING_THE_ACTUAL_BINARY | DOUBLE_CLICK_TO_WRITE_INSTRUCTIONS_ON_RUNNING_THE_ACTUAL_BINARY | ||
|}} | |}} |
Revision as of 19:52, 10 August 2012
Description
SOAPdenovo-Trans is a de novo transcriptome assembler basing on the SOAPdenovo framework, adapt to alternative splicing and different expression level among transcripts.The assembler provides a more accurate, complete and faster way to construct the full-length transcript sets.
Required Modules
Serial
- soapdenovo-trans
System Variables
- HPC_{{#uppercase:soapdenovo-trans}}_DIR - installation directory
- HPC_SOAPDENOVOTRANS_BIN - directory where SOAPdenov-Trans binaries are located