Difference between revisions of "SOAPdenovo-Trans"
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| − | [[Category:Software]] | + | [[Category:Software]][[Category:Biology]][[Category:NGS]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|soapdenovo-trans}} | |{{#vardefine:app|soapdenovo-trans}} | ||
Latest revision as of 00:05, 22 August 2022
Description
SOAPdenovo-Trans is a de novo transcriptome assembler basing on the SOAPdenovo framework, adapt to alternative splicing and different expression level among transcripts.The assembler provides a more accurate, complete and faster way to construct the full-length transcript sets.
Environment Modules
Run module spider soapdenovo-trans to find out what environment modules are available for this application.
System Variables
- HPC_SOAPDENOVO-TRANS_DIR - installation directory
- HPC_SOAPDENOVOTRANS_BIN - directory where SOAPdenov-Trans binaries are located