Difference between revisions of "SOAPdenovo-Trans"
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See the [[{{PAGENAME}}_Install]] page for {{#var: app}} installation notes.|}} | See the [[{{PAGENAME}}_Install]] page for {{#var: app}} installation notes.|}} | ||
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| + | =Validation= | ||
| + | * Validated 4/5/2018 | ||
Revision as of 16:37, 5 April 2018
Description
SOAPdenovo-Trans is a de novo transcriptome assembler basing on the SOAPdenovo framework, adapt to alternative splicing and different expression level among transcripts.The assembler provides a more accurate, complete and faster way to construct the full-length transcript sets.
Required Modules
Serial
- soapdenovo-trans
System Variables
- HPC_{{#uppercase:soapdenovo-trans}}_DIR - installation directory
- HPC_SOAPDENOVOTRANS_BIN - directory where SOAPdenov-Trans binaries are located
Validation
- Validated 4/5/2018