Difference between revisions of "SOAPdenovo"

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==System Variables==
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_SOAPDENOVO_BIN - executable directory
* HPC_SOAPDENOVO_BIN - executable directory
{{#if: {{#var: exe}}|==How To Run==
{{#if: {{#var: exe}}|==How To Run==

Revision as of 21:24, 6 December 2019


soapdenovo website  

SOAPdenovo is a novel short-read assembly method that can build a de novo draft assembly for the human-sized genomes. The program is specially designed to assemble Illumina GA short reads. It creates new opportunities for building reference sequences and carrying out accurate analyses of unexplored genomes in a cost effective way.

31, 63 and 127 maximum kmer size versions are available as SOAPdenovo31mer (SOAPdenovo binary), SOAPdenovo-63mer, and SOAPdenovo-127mer binaries.

soapdenovo/2.04 module includes GapCloser.

Required Modules

modules documentation


  • soapdenovo

System Variables

  • HPC_SOAPDENOVO_DIR - installation directory
  • HPC_SOAPDENOVO_BIN - executable directory


  • Validate 4/5/2018