Difference between revisions of "SNP-Pipeline"
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| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
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Revision as of 21:24, 6 December 2019
Description
SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organisms sequenced from samples of interest to food safety.
Required Modules
Serial
- snp-pipeline
System Variables
- HPC_SNP-PIPELINE_DIR - installation directory
- HPC_SNP-PIPELINE_BIN - executable directory
Citation
If you publish research that uses snp-pipeline you have to cite it as follows: