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smcpp website  

SMC++ is a program for estimating the size history of populations from whole genome sequence data.

System Variables

  • HPC_SMCPP_DIR - installation directory
  • HPC_SMCPP_BIN - executable directory

Job Script Examples

See the SMC++_Job_Scripts page for smcpp Job script examples.


If you publish research that uses smcpp you have to cite it as follows:

J. Terhorst, J. A. Kamm, and Y. S. Song. Robust and scalable inference of population history from hundreds of unphased whole genomes. Nature Genetics, 49(2):303–309, 2017.