Difference between revisions of "SICER"

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(Created page with "Category:SoftwareCategory:BiologyCategory:ChIP-Seq {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|sicer}} |{{#vardefine:url|http://home.gwu.edu/~wpeng/Software...")
 
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==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==
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If you publish research that uses {{#var:app}} you have to cite it as follows:
 
If you publish research that uses {{#var:app}} you have to cite it as follows:
  
[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2732366/ A clustering approach for identification of enriched domains from histone modification
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[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2732366/ A clustering approach for identification of enriched domains from histone modification ChIP-Seq data” Chongzhi Zang, Dustin E. Schones, Chen Zeng, Kairong Cui, Keji Zhao, and Weiqun Peng, Bioinformatics 25, 1952 - 1958 (2009)]
ChIP-Seq data” Chongzhi Zang, Dustin E. Schones, Chen Zeng, Kairong Cui, Keji Zhao, and
 
Weiqun Peng, Bioinformatics 25, 1952 - 1958 (2009)]
 
  
 
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Latest revision as of 21:24, 6 December 2019

Description

sicer website  

A clustering approach for identification of enriched domains from histone modification ChIP-Seq data.

Required Modules

Serial

  • sicer

System Variables

  • HPC_SICER_DIR - installation directory




Citation

If you publish research that uses sicer you have to cite it as follows:

A clustering approach for identification of enriched domains from histone modification ChIP-Seq data” Chongzhi Zang, Dustin E. Schones, Chen Zeng, Kairong Cui, Keji Zhao, and Weiqun Peng, Bioinformatics 25, 1952 - 1958 (2009)