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shrimp website  

SHRiMP is a software package for aligning genomic reads against a target genome. It was primarily developed with the multitudinous short reads of next generation sequencing machines in mind, as well as Applied Biosystem's colourspace genomic representation.

Environment Modules

Run module spider shrimp to find out what environment modules are available for this application.

System Variables

  • HPC_SHRIMP_DIR - installation directory