Difference between revisions of "SHEsisPlus"
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Revision as of 21:24, 6 December 2019
Description
SHEsisPlus is a a software package for analysis of genetic association, Hardy-weinberg equilibrium, linkage disequilibrium and haplotype construction at multiallelic polymorphism loci, compatible for both diploid and polyploid species.
Required Modules
Serial
- gcc/5.2.0
- shesisplus
System Variables
- HPC_SHESISPLUS_DIR - installation directory
Citation
If you publish research that uses shesisplus you have to cite it as follows:
[1] Neigenfind J1, Gyetvai G, Basekow R, Diehl S, Achenbach U, Gebhardt C, Selbig J, Kersten B.Haplotype inference from unphased SNP data in heterozygous polyploids based on SAT. BMC Genomics 2008 Jul 30;9:356. doi: 10.1186/1471-2164-9-356.
[2] Purcell S1, Neale B, Todd-Brown K, Thomas L, Ferreira MA, Bender D, Maller J, Sklar P, de Bakker PI, Daly MJ, Sham PC.PLINK: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet 2007 Sep;81(3):559-75. Epub 2007 Jul 25.
[3] Hedrick PW. Gametic disequilibrium measures: proceed with caution. Genetics 1987 Oct;117(2):331-41.