Description

sepp website

SEPP stands for "SATe-enabled Phylogenetic Placement", and addresses the problem of phylogenetic placement of short reads into reference alignments and trees.

Required Modules

Serial

sepp

System Variables

HPC_SEPP_DIR - installation directory
HPC_SEPP_BIN - executable directory
HPC_SEPP_CONF - configuration examples directory

Additional Information

The sepp module includes all three components of the SEPP suite - SEPP, TIPP, and UPP - the three methods use ensembles of Hidden Markov Models (HMMs) in different ways, each focusing on a different problem..

SEPP - SATe-enabled phylogenetic placement
TIPP - Taxonomic identification and phylogenetic profiling
UPP - Ultra-large alignments using Phylogeny-aware Profiles

Validation

Validate 4/5/2018

SEPP