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The riboPicker tool can be used to automatically identify and efficiently remove rRNA-like sequences from metatranscriptomic and metagenomic datasets. It is easily configurable and provides a user-friendly interface. Template:App Location

Installed Versions

  • 0.4.2

Running the application using modules

To use ribopicker with the environment modules system at HPC the following commands are available:

Get module information for ribopicker:

$module spider ribopicker

Load the prerequisite perl module:

$module load perl

Load the application module:

$module load ribopicker

The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:

  • HPC_RIBOPICKER_DIR - directory where ribopicker is located.
  • HPC_RIBOPICKER_BIN - executable directory

ribopicker module depends on the perl module, so module load perl first.