Difference between revisions of "RepeatMasker"
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performed by one of several popular search engines including, | performed by one of several popular search engines including, | ||
cross_match, ABBlast/WUBlast, RMBlast and Decypher. | cross_match, ABBlast/WUBlast, RMBlast and Decypher. | ||
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==Required Modules== | ==Required Modules== | ||
[[Modules|modules documentation]] | [[Modules|modules documentation]] | ||
===Serial=== | ===Serial=== | ||
*{{#var:app}} | *{{#var:app}} | ||
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| + | * HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | ||
{{#if: {{#var: exe}}|==How To Run== | {{#if: {{#var: exe}}|==How To Run== | ||
WRITE INSTRUCTIONS ON RUNNING THE ACTUAL BINARY|}} | WRITE INSTRUCTIONS ON RUNNING THE ACTUAL BINARY|}} | ||
Revision as of 19:38, 10 August 2012
Description
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences. The output of the program is a detailed annotation of the repeats that are present in the query sequence as well as a modified version of the query sequence in which all the annotated repeats have been masked (default: replaced by Ns). On average, almost 50% of a human genomic DNA sequence currently will be masked by the program. Sequence comparisons in RepeatMasker are performed by one of several popular search engines including, cross_match, ABBlast/WUBlast, RMBlast and Decypher.
Required Modules
Serial
- repeatmasker
System Variables
- HPC_{{#uppercase:repeatmasker}}_DIR - installation directory