Difference between revisions of "RepeatMasker"

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performed by one of several popular search engines including,
 
performed by one of several popular search engines including,
 
cross_match, ABBlast/WUBlast, RMBlast and Decypher.
 
cross_match, ABBlast/WUBlast, RMBlast and Decypher.
 
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==Available Versions==
 
* 3.3.0
 
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==Required Modules==
 
==Required Modules==
 
[[Modules|modules documentation]]
 
[[Modules|modules documentation]]
 
===Serial===
 
===Serial===
 
*{{#var:app}}
 
*{{#var:app}}
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==System Variables==
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
{{#if: {{#var: exe}}|==How To Run==
 
{{#if: {{#var: exe}}|==How To Run==
 
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WRITE INSTRUCTIONS ON RUNNING THE ACTUAL BINARY|}}
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WRITE CITATION HERE
 
WRITE CITATION HERE
 
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=Validation=
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* Validated 4/5/2018

Latest revision as of 21:24, 6 December 2019

Description

repeatmasker website  

RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences. The output of the program is a detailed annotation of the repeats that are present in the query sequence as well as a modified version of the query sequence in which all the annotated repeats have been masked (default: replaced by Ns). On average, almost 50% of a human genomic DNA sequence currently will be masked by the program. Sequence comparisons in RepeatMasker are performed by one of several popular search engines including, cross_match, ABBlast/WUBlast, RMBlast and Decypher.

Required Modules

modules documentation

Serial

  • repeatmasker

System Variables

  • HPC_REPEATMASKER_DIR - installation directory




Validation

  • Validated 4/5/2018