RepeatExplorer
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Description
RepeatExplorer is a computational pipeline for discovery and characterization of repetitive sequences in eukaryotic genomes. The pipeline uses high-throughput genome sequencing data as an input and performs graph-based clustering analysis of sequence read similarities to identify repetitive elements within analyzed samples. The analysis principles were described in Novak et al. (2010).
Required Modules
Serial
- repeatexplorer
System Variables
- HPC_{{#uppercase:repeatexplorer}}_DIR - installation directory