Difference between revisions of "Radorgminer"
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==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
| + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory | ||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 21:55, 6 July 2022
Description
The RADOrgMiner pipeline is designed to genotype sequence tags found in reduced genomic complexity libraries that originate from the organellar genome(s).
Environment Modules
Run module spider radorgminer to find out what environment modules are available for this application.
System Variables
- HPC_RADORGMINER_DIR - installation directory
- HPC_RADORGMINER_BIN - executable directory
Citation
If you publish research that uses radorgminer you have to cite it as follows:
Levente Laczkó, Sándor Jordán, Gábor Sramkó. A magnet to draw a bright needle out from the haystack -- RADOrgMiner, an automated pipeline to genotype organellar reads from RADseq data. Authorea preprint. September 25, 2021.DOI: 10.22541/au.163255933.36686159/v1