Difference between revisions of "R Job Script"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) m (Moskalenko moved page R PBS to R Job Script) |
Moskalenko (talk | contribs) |
||
| Line 1: | Line 1: | ||
| + | [[R|back to the main R page]] | ||
| + | |||
<source lang=bash> | <source lang=bash> | ||
#!/bin/bash | #!/bin/bash | ||
| − | # | + | #SBATCH --job-name=prime_threaded #Job name |
| − | # | + | #SBATCH --mail-type=ALL # Mail events (NONE, BEGIN, END, FAIL, ALL) |
| − | # | + | #SBATCH --mail-user=ENTER_YOUR_EMAIL_HERE # Where to send mail |
| − | # | + | #SBATCH --cpus-per-task=4 # Number of cores for multi-threaded ojbs |
| − | # | + | #SBATCH --mem-per-cpu=1gb # Per processor memory |
| − | # | + | #SBATCH -t 00:05:00 # Walltime |
| − | + | #SBATCH -o prime_threaded.%j.out # Name output file | |
| − | # | ||
| − | # | ||
| − | |||
#Record the time and compute node the job ran on | #Record the time and compute node the job ran on | ||
| − | date; hostname | + | date; hostname; pwd |
#Use modules to load the environment for R | #Use modules to load the environment for R | ||
module load R | module load R | ||
Revision as of 22:20, 20 July 2016
#!/bin/bash
#SBATCH --job-name=prime_threaded #Job name
#SBATCH --mail-type=ALL # Mail events (NONE, BEGIN, END, FAIL, ALL)
#SBATCH --mail-user=ENTER_YOUR_EMAIL_HERE # Where to send mail
#SBATCH --cpus-per-task=4 # Number of cores for multi-threaded ojbs
#SBATCH --mem-per-cpu=1gb # Per processor memory
#SBATCH -t 00:05:00 # Walltime
#SBATCH -o prime_threaded.%j.out # Name output file
#Record the time and compute node the job ran on
date; hostname; pwd
#Use modules to load the environment for R
module load R
#Run R script
Rscript myRscript.R