Difference between revisions of "R Job Script"
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| Line 1: | Line 1: | ||
<source lang=bash> | <source lang=bash> | ||
#!/bin/bash | #!/bin/bash | ||
| − | |||
#PBS -N R-demo | #PBS -N R-demo | ||
#PBS -M YOUREMAIL@ufl.edu | #PBS -M YOUREMAIL@ufl.edu | ||
| Line 10: | Line 9: | ||
#PBS -l pmem=1gb | #PBS -l pmem=1gb | ||
#PBS -l walltime=00:05:00 | #PBS -l walltime=00:05:00 | ||
| − | + | #Change to the current working directory if inside a job | |
| − | + | if [[ -d $PBS_O_WORKDIR ]]; then cd $PBS_O_WORKDIR; fi | |
| − | #Change to the directory | ||
| − | cd $PBS_O_WORKDIR | ||
| + | #Record the time and compute node the job ran on | ||
| + | date; hostname | ||
#Use modules to load the environment for R | #Use modules to load the environment for R | ||
module load R | module load R | ||
#Run R script | #Run R script | ||
| − | + | Rscript myRscript.R | |
</source> | </source> | ||
Revision as of 16:25, 11 April 2015
#!/bin/bash
#PBS -N R-demo
#PBS -M YOUREMAIL@ufl.edu
#PBS -m abe
#PBS -o R_demo.$PBS_JOBID.out
#PBS -j oe
#PBS -l nodes=1:ppn=1
#PBS -l pmem=1gb
#PBS -l walltime=00:05:00
#Change to the current working directory if inside a job
if [[ -d $PBS_O_WORKDIR ]]; then cd $PBS_O_WORKDIR; fi
#Record the time and compute node the job ran on
date; hostname
#Use modules to load the environment for R
module load R
#Run R script
Rscript myRscript.R