Difference between revisions of "R Job Script"
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<source lang=bash> | <source lang=bash> | ||
#!/bin/bash | #!/bin/bash | ||
| − | #SBATCH --job-name= | + | #SBATCH --job-name=R_test #Job name |
| − | #SBATCH --mail-type= | + | #SBATCH --mail-type=END,FAIL # Mail events (NONE, BEGIN, END, FAIL, ALL) |
#SBATCH --mail-user=ENTER_YOUR_EMAIL_HERE # Where to send mail | #SBATCH --mail-user=ENTER_YOUR_EMAIL_HERE # Where to send mail | ||
| − | #SBATCH -- | + | #SBATCH --ntasks=1 |
| − | #SBATCH --mem | + | #SBATCH --mem=1gb # Per processor memory |
| − | #SBATCH - | + | #SBATCH --time=00:05:00 # Walltime |
| − | #SBATCH - | + | #SBATCH --output=r_job.%j.out # Name output file |
| − | |||
#Record the time and compute node the job ran on | #Record the time and compute node the job ran on | ||
date; hostname; pwd | date; hostname; pwd | ||
#Use modules to load the environment for R | #Use modules to load the environment for R | ||
| − | module load | + | module load R |
#Run R script | #Run R script | ||
Rscript myRscript.R | Rscript myRscript.R | ||
| + | |||
| + | date | ||
</source> | </source> | ||
Latest revision as of 15:47, 19 November 2018
#!/bin/bash
#SBATCH --job-name=R_test #Job name
#SBATCH --mail-type=END,FAIL # Mail events (NONE, BEGIN, END, FAIL, ALL)
#SBATCH --mail-user=ENTER_YOUR_EMAIL_HERE # Where to send mail
#SBATCH --ntasks=1
#SBATCH --mem=1gb # Per processor memory
#SBATCH --time=00:05:00 # Walltime
#SBATCH --output=r_job.%j.out # Name output file
#Record the time and compute node the job ran on
date; hostname; pwd
#Use modules to load the environment for R
module load R
#Run R script
Rscript myRscript.R
date