Difference between revisions of "R Job Script"

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Line 15: Line 15:
 
date; hostname; pwd
 
date; hostname; pwd
 
#Use modules to load the environment for R
 
#Use modules to load the environment for R
module load R
+
module load gcc R
  
 
#Run R script  
 
#Run R script  
 
Rscript myRscript.R
 
Rscript myRscript.R
 
</source>
 
</source>

Revision as of 14:00, 30 June 2017

back to the main R page

#!/bin/bash
#SBATCH --job-name=prime_threaded   #Job name	
#SBATCH --mail-type=ALL   # Mail events (NONE, BEGIN, END, FAIL, ALL)
#SBATCH --mail-user=ENTER_YOUR_EMAIL_HERE   # Where to send mail	
#SBATCH --cpus-per-task=4   # Number of cores for multi-threaded ojbs
#SBATCH --mem-per-cpu=1gb   # Per processor memory
#SBATCH -t 00:05:00   # Walltime
#SBATCH -o prime_threaded.%j.out   # Name output file 

#Record the time and compute node the job ran on
date; hostname; pwd
#Use modules to load the environment for R
module load gcc R

#Run R script 
Rscript myRscript.R