Difference between revisions of "R Job Script"
Jump to navigation
Jump to search
(Created page with "<source lang=bash> #!/bin/bash # #PBS -N R-demo #PBS -M YOUREMAIL@ufl.edu #PBS -m abe #PBS -o R_demo.$PBS_JOBID.out #PBS -j oe #PBS -l nodes=1:ppn=1 #PBS -l pmem=1gb #PBS -l w...") |
|||
| Line 12: | Line 12: | ||
# | # | ||
| − | #Change to the directory | + | #Change to the directory from which the job was launched. |
cd $PBS_O_WORKDIR | cd $PBS_O_WORKDIR | ||
Revision as of 11:40, 11 April 2015
#!/bin/bash
#
#PBS -N R-demo
#PBS -M YOUREMAIL@ufl.edu
#PBS -m abe
#PBS -o R_demo.$PBS_JOBID.out
#PBS -j oe
#PBS -l nodes=1:ppn=1
#PBS -l pmem=1gb
#PBS -l walltime=00:05:00
#
#Change to the directory from which the job was launched.
cd $PBS_O_WORKDIR
#Use modules to load the environment for R
module load R
#Run R script
R CMD BATCH myRscript.R