R Benchmark 2.5

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Revision as of 21:14, 5 April 2018 by Jakers (talk | contribs) (We now have a c6420 with Skylake processors. Do we want to do benchmarks on it?)
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Processor type
HPG1 = AMD Opteron 6378 @ 2.4GHz
HPG2 = Intel Haswell Intel Xeon E5-2698 v3 @ 2.30GHz (testing)
Benchmark Name Time, sec
R version 3.0.2 3.2.0
Processor type HPG1 HPG2 HPG1 HPG2
I. Matrix calculation
Creation, transp., deformation of a 2500x2500 matrix 1.69 1.20 1.58 1.07
2400x2400 normal distributed random matrix ^1000 2.70 1.30 2.69 1.32
Sorting of 7,000,000 random values 1.32 0.81 1.36 0.87
2800x2800 cross-product matrix (b = a' * a) 25.20 13.18 2.73 0.79
Linear regr. over a 3000x3000 matrix (c = a \ b') 12.57 5.92 1.37 0.41
Trimmed geom. mean (2 extremes eliminated) 3.86 2.10 1.80 0.90
II. Matrix functions
FFT over 2,400,000 random values 0.62 0.32 0.64 0.29
Eigenvalues of a 640x640 random matrix 1.75 0.93 0.81 0.35
Determinant of a 2500x2500 random matrix 9.04 4.29 1.19 0.39
Cholesky decomposition of a 3000x3000 matrix 9.27 5.07 0.99 0.40
Inverse of a 1600x1600 random matrix 9.14 3.37 1.18 0.31
Trimmed geom. mean (2 extremes eliminated) 5.25 2.38 0.98 0.35
III. Programmation
3,500,000 Fibonacci numbers calculation (vector calc)(sec) 2.97 1.47 2.70 1.35
Creation of a 3000x3000 Hilbert matrix (matrix calc) (sec) 0.62 0.43 0.44 0.32
Grand common divisors of 400,000 pairs (recursion) 1.72 1.05 0.86 0.49
Creation of a 500x500 Toeplitz matrix (loops) 1.21 0.52 0.74 0.34
Escoufier's method on a 45x45 matrix (mixed) 0.88 0.62 0.62 0.40
Trimmed geom. mean (2 extremes eliminated) 1.22 0.70 0.74 0.41
Total time for all 15 tests 80.71 40.48 19.90 9.10
Overall mean (sum of I, II and III trimmed means/3)_ (sec) 2.91 1.51 1.09 0.50