Difference between revisions of "RStudio"

Revision as of 21:59, 21 August 2022

Description

RStudio is an integrated development environment (IDE) for R. It includes a console, syntax-highlighting editor that supports direct code execution, as well as tools for plotting, history, debugging and workspace management.

Environment Modules

Run module spider rstudio to find out what environment modules are available for this application.

System Variables

HPC_RSTUDIO_DIR - installation directory

Additional Information

RStudio is an integrated development environment (IDE) for R. It includes a console, syntax-highlighting editor that supports direct code execution, as well as tools for plotting, history, debugging and workspace management.

The recommended way to run RStudio on HiPerGator is to start it in Open OnDemand.

Alternatively, you can use the gui module to start an interactive RStudio sessions that you can view in your web browser. See GUI Programs for more details.

[jdoe@gator ~]$ module load gui
[jdoe@gator ~]$ gui start -e rstudio

To load a specific version:
[jdoe@gator ~]$ gui start -e rstudio --module rstudio/1.1.453

See 'gui start -h' for arguments to specify a resource request and so on.

;Note:
:If you see your mouse cursor offset from the real location in the RStudio window check your RStudio editor font preferences. A known good font is 'DejaVu Sans Mono'.

@@ Line 1: / Line 1: @@
-[[Category:Software]]
+[[Category:Software]][[Category:Statistics]]
 {|<!--CONFIGURATION: REQUIRED-->
 |{{#vardefine:app|rstudio}}
@@ Line 21: / Line 21: @@
 <!--Modules-->
-==Required Modules==
+==Environment Modules==
-===Serial===
+Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
-* {{#var:app}}
-<!--
-===Parallel (OpenMP)===
-* intel
-* {{#var:app}}
-===Parallel (MPI)===
-* intel
-* openmpi
-* {{#var:app}}
--->
 ==System Variables==
-* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
+* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 <!--Configuration-->
 {{#if: {{#var: conf}}|==Configuration==
@@ Line 44: / Line 34: @@
 RStudio is an integrated development environment (IDE) for R. It includes a console, syntax-highlighting editor that supports direct code execution, as well as tools for plotting, history, debugging and workspace management.
-;Note:
+The recommended way to run RStudio on HiPerGator is to start it in [[Open_OnDemand|Open OnDemand]].
-:If you see your mouse cursor offset from the real location in the RStudio window check your RStudio editor font preferences. A known good font is 'DejaVu Sans Mono'.
+Alternatively, you can use the gui module to start an interactive RStudio sessions that you can view in your web browser. See [[GUI Programs]] for more details.
-The easiest way to launch RSTudio within a gui SLURM session is to use the launch_rstudio_gui command from the gui module. For example:
 <pre>
 [jdoe@gator ~]$ module load gui
-[jdoe@gator ~]$ launch_rstudio_gui
+[jdoe@gator ~]$ gui start -e rstudio
-Starting rstudio under Xpra in a SLURM gui session.
+To load a specific version:
+[jdoe@gator ~]$ gui start -e rstudio --module rstudio/1.1.453
-Requested rstudio memory size: '4gb'
+See 'gui start -h' for arguments to specify a resource request and so on.
-Requested '1' processor cores
+;Note:
+:If you see your mouse cursor offset from the real location in the RStudio window check your RStudio editor font preferences. A known good font is 'DejaVu Sans Mono'.
-Requested '8' hours for the session
-Waiting for the job to start as '-n' (nowait) argument was not specified.
-The rstudio job '123456' has started. Listing all active xpra sessions.
-Refreshing the session list for jdoe to remove stale sessions
-List of active Xpra sessions for jdoe:
-Session: i111a-s222.rc.ufl.edu:3713
-    Job ID: 123456, Name: RStudio
-    Client command:
-         xpra attach ssh:jdoe@i111a-s222.rc.ufl.edu:3713
-        or (downloaded script):
-        ./xpra attach ssh:jdoe@i111a-s222.rc.ufl.edu:3713
-</pre>
-Run
- launch_rstudio_gui -h
-to see the help message with all available arguments to change processor, memory, or time limits. Once the job starts and you get the client command past it into the terminal on your local machine where you have [[Xpra]] installed and the 'xpra' command available.
 |}}