Revision as of 20:11, 28 November 2012 by Moskalenko (talk | contribs)
Jump to navigation Jump to search


radical website  

RADICAL stands for Random Addition Concatenation Analysis. It concatenates randomly selected gene partitions and builds phylogenetic trees (MP with PAUP*/ML with RAxML) to examine tree-to-tree agreement of the concatenation path. Also calculates ML support per node and partition. See Narechania et al. (2011 Genome Biol Evol).

Required Modules


  • radical

System Variables

  • HPC_{{#uppercase:radical}}_DIR

Additional Information

The radical/0.2 code is preset for using 2 RAxML threads, so the batch job resource request must be in the form of "nodes=1:ppn=2". There is no PAUP option.