Name

Description

a4Core

Automated Affymetrix Array Analysis Core Package

a4Preproc

Automated Affymetrix Array Analysis Preprocessing Package

abind

Combine Multidimensional Arrays

acepack

ACE and AVAS for Selecting Multiple Regression Transformations

adabag

Applies Multiclass AdaBoost.M1

adagio

Discrete and Global Optimization Routines

ade4

Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences

adegenet

Exploratory Analysis of Genetic and Genomic Data

AdhereR

Adherence to Medications

adnuts

NoUTurn MCMC Sampling for 'ADMB' and 'TMB' Models

affxparser

Affymetrix File Parsing SDK

affy

Methods for Affymetrix Oligonucleotide Arrays

affyio

Tools for parsing Affymetrix data files

affyPLM

Methods for fitting probelevel models

AGHmatrix

Relationship matrices for diploid and autopolyploid species

agricolae

Statistical Procedures for Agricultural Research

akima

Interpolation of Irregularly and Regularly Spaced Data

ALDEx2

Analysis Of Differential Abundance Taking Sample Variation Into Account

AlgDesign

Algorithmic Experimental Design

amap

Another Multidimensional Analysis Package

Amelia

A Program for Missing Data

animation

A Gallery of Animations in Statistics and Utilities to Create Animations

annaffy

Annotation tools for Affymetrix biological metadata

annotate

Annotation for microarrays

AnnotationDbi

Annotation Database Interface

AnnotationFilter

Facilities for Filtering Bioconductor Annotation Resources

AnnotationHub

Client to access AnnotationHub resources

annotSnpStats

Annotated SnpMatrix objects

apcluster

Affinity Propagation Clustering

ape

Analyses of Phylogenetics and Evolution

arm

Data Analysis Using Regression and Multilevel/Hierarchical Models

aroma.light

LightWeight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data Types

arrayQualityMetrics

Quality metrics report for microarray data sets

assertive

Readable Check Functions to Ensure Code Integrity

assertive.base

A Lightweight Core of the 'assertive' Package

assertive.code

Assertions to Check Properties of Code

assertive.data

Assertions to Check Properties of Data

assertive.data.uk

Assertions to Check Properties of Strings

assertive.data.us

Assertions to Check Properties of Strings

assertive.datetimes

Assertions to Check Properties of Dates and Times

assertive.files

Assertions to Check Properties of Files

assertive.matrices

Assertions to Check Properties of Matrices

assertive.models

Assertions to Check Properties of Models

assertive.numbers

Assertions to Check Properties of Numbers

assertive.properties

Assertions to Check Properties of Variables

assertive.reflection

Assertions for Checking the State of R

assertive.sets

Assertions to Check Properties of Sets

assertive.strings

Assertions to Check Properties of Strings

assertive.types

Assertions to Check Types of Variables

assertthat

Easy Pre and Post Assertions

automap

Automatic interpolation package

backports

Reimplementations of Functions Introduced Since R3.0.0

ballgown

Flexible

BAMMtools

Analysis and Visualization of Macroevolutionary Dynamics on Phylogenetic Trees

base64

Base64 Encoder and Decoder

base64enc

Tools for base64 encoding

baseline

Baseline Correction of Spectra

bayesm

Bayesian Inference for Marketing/MicroEconometrics

bayesplot

Plotting for Bayesian Models

bazar

Miscellaneous Basic Functions

BB

Solving and Optimizing LargeScale Nonlinear Systems

bbmle

Tools for General Maximum Likelihood Estimation

bdsmatrix

Routines for Block Diagonal Symmetric Matrices

beadarray

Quality assessment and lowlevel analysis for Illumina BeadArray data

BeadDataPackR

Compression of Illumina BeadArray data

beanplot

Visualization via Beanplots (like Boxplot/Stripchart/Violin Plot)

BEDMatrix

Extract Genotypes from a PLINK .bed File

bestglm

Best Subset GLM and Regression Utilities

BGData

A Suite of Packages for Analysis of Big Genomic Data

BGLR

Bayesian Generalized Linear Regression

BH

Boost C++ Header Files

BiasedUrn

Biased Urn Model Distributions

bibtex

Bibtex Parser

biganalytics

Utilities for 'big.matrix' Objects from Package 'bigmemory'

big.char

Provides Very Large Vectors of Character Strings

big.data.frame

Extend big.char and bigmemory's big.matrix to support largerthanRAM data.framelike objects in R.

biglm

bounded memory linear and generalized linear models

bigmemory

Manage Massive Matrices with Shared Memory and MemoryMapped Files

bigmemory.sri

A shared resource interface for Bigmemory Project packages

BigVAR

Dimension Reduction Methods for Multivariate Time Series

bindr

Parametrized Active Bindings

bindrcpp

An 'Rcpp' Interface to Active Bindings

Biobase

Biobase: Base functions for Bioconductor

BiocGenerics

S4 generic functions for Bioconductor

BiocInstaller

Install/Update Bioconductor

BiocParallel

Bioconductor facilities for parallel evaluation

BioGeoBEARS

BioGeography with Bayesian (and Likelihood) Evolutionary Analysis in R Scripts

biomaRt

Interface to BioMart databases (e.g. Ensembl

biomformat

An interface package for the BIOM file format

Biostrings

Efficient manipulation of biological strings

biovizBase

Basic graphic utilities for visualization of genomic data.

bipartite

Visualising Bipartite Networks and Calculating Some (Ecological) Indices

bit

A Class for Vectors of 1Bit Booleans

bit64

A S3 Class for Vectors of 64bit Integers

bitops

Bitwise Operations

blob

A Simple S3 Class for Representing Vectors of Binary Data ('BLOBS')

blockmodeling

Generalized and Classical Blockmodeling of Valued Networks

bold

Interface to Bold Systems API

Boom

Bayesian Object Oriented Modeling

BoomSpikeSlab

MCMC for Spike and Slab Regression

boot

Bootstrap Functions (Originally by Angelo Canty for S)

brew

Templating Framework for Report Generation

broom

Convert Statistical Analysis Objects into Tidy Data Frames

BSgenome

Software infrastructure for efficient representation of full genomes and their SNPs

BSgenome.Hsapiens.UCSC.hg19

Full genome sequences for Homo sapiens (UCSC version hg19)

bsts

Bayesian Structural Time Series

bumphunter

Bump Hunter

BurStFin

Burns Statistics Financial

Cairo

R graphics device using cairo graphics library for creating highquality bitmap (PNG

calibrate

Calibration of Scatterplot and Biplot Axes

callr

Call R from R

CAMERA

Collection of annotation related methods for mass spectrometry data

car

Companion to Applied Regression

carData

Companion to Applied Regression Data Sets

caret

Classification and Regression Training

caTools

Tools: moving window statistics

CCA

Canonical correlation analysis

cccrm

Concordance Correlation Coefficient for Repeated (and NonRepeated) Measures

ccdrAlgorithm

CCDr Algorithm for Learning Sparse Gaussian Bayesian Networks

cellranger

Translate Spreadsheet Cell Ranges to Rows and Columns

checkmate

Fast and Versatile Argument Checks

ChemoSpec

Exploratory Chemometrics for Spectroscopy

chopsticks

The snp.matrix and X.snp.matrix classes

chron

Chronological Objects which can Handle Dates and Times

circlize

Circular Visualization

cladoRcpp

C++ implementations of phylogenetic cladogenesis calculations

class

Functions for Classification

classInt

Choose Univariate Class Intervals

cleangeo

Cleaning Geometries from Spatial Objects

cli

Helpers for Developing Command Line Interfaces

clipr

Read and Write from the System Clipboard

clue

Cluster Ensembles

cluster

Finding Groups in Data: Cluster Analysis Extended Rousseeuw et al.

clusterGeneration

Random Cluster Generation (with Specified Degree of Separation)

clusterProfiler

statistical analysis and visualization of functional profiles for genes and gene clusters

cnv

Detection of Copy Number Variation by Sequencing

coda

Output Analysis and Diagnostics for MCMC

codetools

Code Analysis Tools for R

coin

Conditional Inference Procedures in a Permutation Test Framework

colorspace

Color Space Manipulation

colourpicker

A Colour Picker Tool for Shiny and for Selecting Colours in Plots

combinat

combinatorics utilities

commonmark

High Performance CommonMark and Github Markdown Rendering in R

compare

Comparing Objects for Differences

ComplexHeatmap

Making Complex Heatmaps

compositions

Compositional Data Analysis

CompRandFld

CompositeLikelihood Based Analysis of Random Fields

concaveman

A Very Fast 2D Concave Hull Algorithm

CondReg

Condition Number Regularized Covariance Estimation

config

Manage Environment Specific Configuration Values

corpcor

Efficient Estimation of Covariance and (Partial) Correlation

covr

Test Coverage for Packages

cowplot

Streamlined Plot Theme and Plot Annotations for 'ggplot2'

CpGassoc

Association Between Methylation and a Phenotype of Interest

crayon

Colored Terminal Output

crch

Censored Regression with Conditional Heteroscedasticity

crmn

CCMN and other noRMalizatioN methods for metabolomics data

crochet

Implementation Helper for [ and [< Of Custom MatrixLike Types

crosstalk

InterWidget Interactivity for HTML Widgets

crul

HTTP Client

cubature

Adaptive Multivariate Integration over Hypercubes

curl

A Modern and Flexible Web Client for R

CVST

Fast CrossValidation via Sequential Testing

cvTools

Crossvalidation tools for regression models

dagitty

Graphical Analysis of Structural Causal Models

DASTool

DAS Tool  Dereplication Aggregation and Scoring Tool for genomeresolved metagenomics

DatABEL

FileBased Access to Large Matrices Stored on HDD in Binary Format

data.table

Extension of `data.frame`

date

Functions for Handling Dates

DBI

R Database Interface

dbplyr

A 'dplyr' Back End for Databases

dcurver

Utility Functions for Davidian Curves

ddalpha

DepthBased Classification and Calculation of Data Depth

debugme

Debug R Packages

DelayedArray

Delayed operations on arraylike objects

deldir

Delaunay Triangulation and Dirichlet (Voronoi) Tessellation

denstrip

Density Strips and Other Methods for Compactly Illustrating Distributions

DEoptimR

Differential Evolution Optimization in Pure R

depmixS4

Dependent Mixture Models  Hidden Markov Models of GLMs and Other Distributions in S4

Deriv

Symbolic Differentiation

desc

Manipulate DESCRIPTION Files

DESeq

Differential gene expression analysis based on the negative binomial distribution

DESeq2

Differential gene expression analysis based on the negative binomial distribution

deSolve

Solvers for Initial Value Problems of Differential Equations ('ODE'

devtools

Tools to Make Developing R Packages Easier

dfoptim

DerivativeFree Optimization

dichromat

Color Schemes for Dichromats

diffusionMap

Diffusion map

digest

Create Compact Hash Digests of R Objects

dimRed

A Framework for Dimensionality Reduction

diptest

Hartigan's Dip Test Statistic for Unimodality  Corrected

discretecdAlgorithm

CoordinateDescent Algorithm for Learning Sparse Discrete Bayesian Networks

dismo

Species Distribution Modeling

diversitree

Comparative 'Phylogenetic' Analyses of Diversification

dlm

Bayesian and Likelihood Analysis of Dynamic Linear Models

doBy

Groupwise Statistics

DO.db

A set of annotation maps describing the entire Disease Ontology

doMC

Foreach Parallel Adaptor for 'parallel'

doParallel

Foreach Parallel Adaptor for the 'parallel' Package

doRNG

Generic Reproducible Parallel Backend for 'foreach' Loops

DOSE

Disease Ontology Semantic and Enrichment analysis

doSNOW

Foreach Parallel Adaptor for the 'snow' Package

dotCall64

Enhanced Foreign Function Interface Supporting Long Vectors

dplyr

A Grammar of Data Manipulation

DRR

Dimensionality Reduction via Regression

DT

A Wrapper of the JavaScript Library 'DataTables'

dtw

Dynamic Time Warping Algorithms

dupRadar

Assessment of duplication rates in RNASeq datasets

dygraphs

Interface to 'Dygraphs' Interactive Time Series Charting Library

dynamicTreeCut

Methods for Detection of Clusters in Hierarchical Clustering Dendrograms

e1071

Misc Functions of the Department of Statistics

earth

Multivariate Adaptive Regression Splines

EbayesThresh

Empirical Bayes Thresholding and Related Methods

EBImage

Image processing and analysis toolbox for R

EBSeq

An R package for gene and isoform differential expression analysis of RNAseq data

edgeR

Empirical Analysis of Digital Gene Expression Data in R

eDNAoccupancy

Multiscale Occupancy Modeling of Environmental DNA Data

egg

Extensions for 'ggplot2': Custom Geom

ellipse

Functions for Drawing Ellipses and EllipseLike Confidence Regions

emdbook

Support Functions and Data for "Ecological Models and Data"

emulator

Bayesian Emulation of Computer Programs

energy

EStatistics: Multivariate Inference via the Energy of Data

EnsDb.Hsapiens.v75

Ensembl based annotation package

ensembldb

Utilities to create and use Ensemblbased annotation databases

equateIRT

IRT Equating Methods

estimability

Tools for Assessing Estimability of Linear Predictions

EthSEQ

Ethnicity Annotation from Whole Exome Sequencing Data

evaluate

Parsing and Evaluation Tools that Provide More Details than the Default

evd

Functions for Extreme Value Distributions

expm

Matrix Exponential

fastAdaboost

a Fast Implementation of Adaboost

fastcluster

Fast Hierarchical Clustering Routines for R and 'Python'

fastICA

FastICA Algorithms to Perform ICA and Projection Pursuit

fastmatch

Fast match() function

fastseg

fastseg  a fast segmentation algorithm

fBasics

Rmetrics  Markets and Basic Statistics

FD

Measuring functional diversity (FD) from multiple traits

fda

Functional Data Analysis

FDb.InfiniumMethylation.hg19

Annotation package for Illumina Infinium DNA methylation probes

fdth

Frequency Distribution Tables

ff

MemoryEfficient Storage of Large Data on Disk and Fast Access Functions

fftwtools

Wrapper for 'FFTW3' Includes: OneDimensional Univariate

fGarch

Rmetrics  Autoregressive Conditional Heteroskedastic Modelling

FGN

Fractional Gaussian Noise and power law decay time series model fitting

fgsea

Fast Gene Set Enrichment Analysis

fields

Tools for Spatial Data

FinTS

Companion to Tsay (2005) Analysis of Financial Time Series

fitdistrplus

Help to Fit of a Parametric Distribution to NonCensored or Censored Data

fit.models

Compare Fitted Models

flare

Family of Lasso Regression

flexmix

Flexible Mixture Modeling

FNN

Fast Nearest Neighbor Search Algorithms and Applications

forcats

Tools for Working with Categorical Variables (Factors)

foreach

Provides Foreach Looping Construct for R

forecast

Forecasting Functions for Time Series and Linear Models

foreign

Read Data Stored by 'Minitab'

formatR

Format R Code Automatically

Formula

Extended Model Formulas

fpc

Flexible Procedures for Clustering

fracdiff

Fractionally differenced ARIMA aka ARFIMA(p

fst

Lightning Fast Serialization of Data Frames for R

futile.logger

A Logging Utility for R

futile.matrix

Random Matrix Generation and Manipulation

futile.options

Futile Options Management

future

Unified Parallel and Distributed Processing in R for Everyone

future.apply

Apply Function to Elements in Parallel using Futures

GA

Genetic Algorithms

GAabbreviate

Abbreviating Items Measures using Genetic Algorithms

gap

Genetic Analysis Package

gapminder

Data from Gapminder

gbm

Generalized Boosted Regression Models

gcrma

Background Adjustment Using Sequence Information

gdalUtils

Wrappers for the Geospatial Data Abstraction Library (GDAL) Utilities

gdata

Various R Programming Tools for Data Manipulation

gdmp

Genomic Data Management

gdsfmt

R Interface to CoreArray Genomic Data Structure (GDS) Files

gdtools

Utilities for Graphical Rendering

geeM

Solve Generalized Estimating Equations

geepack

Generalized Estimating Equation Package

geigen

Calculate Generalized Eigenvalues

geiger

Analysis of Evolutionary Diversification

GenABEL

genomewide SNP association analysis

GenABEL.data

Package contains data which is used by GenABEL example and test functions

gender

Predict Gender from Names Using Historical Data

genefilter

genefilter: methods for filtering genes from highthroughput experiments

geneplotter

Graphics related functions for Bioconductor

GeneSelector

Stability and Aggregation of ranked gene lists

genetics

Population Genetics

genlasso

Path algorithm for generalized lasso problems

GenomeInfoDb

Utilities for manipulating chromosome and other 'seqname' identifiers

GenomeInfoDbData

Species and taxonomy ID look up tables used by GenomeInfoDb

GenomicAlignments

Representation and manipulation of short genomic alignments

GenomicFeatures

Tools for making and manipulating transcript centric annotations

GenomicRanges

Representation and manipulation of genomic intervals and variables defined along a genome

geometry

Mesh Generation and Surface Tesselation

GEOquery

Get data from NCBI Gene Expression Omnibus (GEO)

geosphere

Spherical Trigonometry

getopt

CLike 'getopt' Behavior

GetoptLong

Parsing CommandLine Arguments and Variable Interpolation

GGally

Extension to 'ggplot2'

ggbio

Visualization tools for genomic data

ggdendro

Create Dendrograms and Tree Diagrams Using 'ggplot2'

ggjoy

Joyplots in 'ggplot2'

ggm

Functions for graphical Markov models

ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics

ggplot2movies

Movies Data

ggpubr

'ggplot2' Based Publication Ready Plots

ggRandomForests

Visually Exploring Random Forests

ggrepel

Automatically Position NonOverlapping Text Labels with 'ggplot2'

ggridges

Ridgeline Plots in 'ggplot2'

ggsci

Scientific Journal and SciFi Themed Color Palettes for 'ggplot2'

ggsignif

Significance Brackets for 'ggplot2'

ggtree

an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data

ggvis

Interactive Grammar of Graphics

GIGrvg

Random Variate Generator for the GIG Distribution

git2r

Provides Access to Git Repositories

glasso

Graphical lasso estimation of Gaussian graphical models

glm2

Fitting Generalized Linear Models

glmmLasso

Variable Selection for Generalized Linear Mixed Models by L1Penalized Estimation

glmnet

Lasso and ElasticNet Regularized Generalized Linear Models

GlobalOptions

Generate Functions to Get or Set Global Options

globals

Identify Global Objects in R Expressions

glue

Interpreted String Literals

gmailr

Access the Gmail RESTful API

gmodels

Various R Programming Tools for Model Fitting

gmp

Multiple Precision Arithmetic

GO.db

A set of annotation maps describing the entire Gene Ontology

GOSemSim

GOterms Semantic Similarity Measures

gower

Gower's Distance

GPArotation

GPA Factor Rotation

gplots

Various R Programming Tools for Plotting Data

graph

graph: A package to handle graph data structures

gridBase

Integration of base and grid graphics

gridExtra

Miscellaneous Functions for "Grid" Graphics

gridSVG

Export 'grid' Graphics as SVG

grplasso

Fitting user specified models with Group Lasso penalty

grpreg

Regularization Paths for Regression Models with Grouped Covariates

gss

General Smoothing Splines

gstat

Spatial and SpatioTemporal Geostatistical Modelling

gsubfn

Utilities for Strings and Function Arguments

gtable

Arrange 'Grobs' in Tables

gtools

Various R Programming Tools

GUESSFM

Using GUESS for Fine Mapping

hashmap

The Faster Hash Map

haven

Import and Export 'SPSS'

hdf5r

Interface to the 'HDF5' Binary Data Format

HDMD

Statistical Analysis Tools for High Dimension Molecular Data (HDMD)

hexbin

Hexagonal Binning Routines

highr

Syntax Highlighting for R Source Code

HKprocess

HurstKolmogorov Process

Hmisc

Harrell Miscellaneous

hms

Pretty Time of Day

horseshoe

Implementation of the Horseshoe Prior

hpar

Human Protein Atlas in R

htmlTable

Advanced Tables for Markdown/HTML

htmltools

Tools for HTML

htmlwidgets

HTML Widgets for R

httpcode

'HTTP' Status Code Helper

httpuv

HTTP and WebSocket Server Library

httr

Tools for Working with URLs and HTTP

huge

HighDimensional Undirected Graph Estimation

hunspell

HighPerformance Stemmer

hwriter

HTML Writer  Outputs R objects in HTML format

hydroGOF

GoodnessofFit Functions for Comparison of Simulated and Observed Hydrological Time Series

hydroTSM

Time Series Management

hyperSpec

Work with Hyperspectral Data

ica

Independent Component Analysis

igraph

Network Analysis and Visualization

illuminaio

Parsing Illumina Microarray Output Files

impute

impute: Imputation for microarray data

indicspecies

Relationship Between Species and Groups of Sites

inline

Functions to Inline C

intansv

Integrative analysis of structural variations

interactiveDisplayBase

Base package for enabling powerful shiny web displays of Bioconductor objects

intervals

Tools for Working with Points and Intervals

IONiseR

Quality Assessment Tools for Oxford Nanopore MinION data

IPO

Automated Optimization of XCMS Data Processing parameters

ipred

Improved Predictors

ipw

Estimate Inverse Probability Weights

IRanges

Infrastructure for manipulating intervals on sequences

IRdisplay

'Jupyter' Display Machinery

IRkernel

Native R Kernel for the 'Jupyter Notebook'

irlba

Fast Truncated Singular Value Decomposition and Principal Components Analysis for Large Dense and Sparse Matrices

itcSegment

Individual Tree Crowns Segmentation

iterators

Provides Iterator Construct for R

itertools

Iterator Tools

jagsUI

A Wrapper Around 'rjags' to Streamline 'JAGS' Analyses

jomo

Multilevel Joint Modelling Multiple Imputation

jpeg

Read and write JPEG images

jsonlite

A Robust

kebabs

KernelBased Analysis Of Biological Sequences

KEGG.db

A set of annotation maps for KEGG

KEGGgraph

KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor

KEGGprofile

An annotation and visualization package for multitypes and multigroups expression data in KEGG pathway

KEGGREST

Clientside REST access to KEGG

keras

R Interface to 'Keras'

kerasR

R Interface to the Keras Deep Learning Library

kernlab

KernelBased Machine Learning Lab

KernSmooth

Functions for Kernel Smoothing Supporting Wand & Jones (1995)

KFAS

Kalman Filter and Smoother for Exponential Family State Space Models

kimisc

Kirill's Miscellaneous Functions

kinship2

Pedigree Functions

klaR

Classification and Visualization

knitr

A GeneralPurpose Package for Dynamic Report Generation in R

labeling

Axis Labeling

labelled

Manipulating Labelled Data

lambda.r

Modeling Data with Functional Programming

lambda.tools

Tools for Modeling Data with Functional Programming

lars

Least Angle Regression

lassoshooting

L1 regularized regression (Lasso) solver using the Cyclic Coordinate Descent algorithm aka Lasso Shooting

later

Utilities for Delaying Function Execution

lattice

Trellis Graphics for R

latticeExtra

Extra Graphical Utilities Based on Lattice

lava

Latent Variable Models

lavaan

Latent Variable Analysis

lavaan.survey

Complex Survey Structural Equation Modeling (SEM)

lazyeval

Lazy (NonStandard) Evaluation

LDcorSV

Linkage Disequilibrium Corrected by the Structure and the Relatedness

LDheatmap

Graphical Display of Pairwise Linkage Disequilibria Between SNPs

leaflet

Create Interactive Web Maps with the JavaScript 'Leaflet' Library

leaflet.extras

Extra Functionality for 'leaflet' Package

leaps

Regression Subset Selection

LearnBayes

Functions for Learning Bayesian Inference

lfmm

Latent Factor Mixed Models

LiblineaR

Linear Predictive Models Based on the 'LIBLINEAR' C/C++ Library

lidR

Airborne LiDAR Data Manipulation and Visualization for Forestry Applications

limma

Linear Models for Microarray Data

limSolve

Solving Linear Inverse Models

LinkedMatrix

ColumnLinked and RowLinked Matrices

lintr

A 'Linter' for R Code

listenv

Environments Behaving (Almost) as Lists

lme4

Linear MixedEffects Models using 'Eigen' and S4

lmmen

Linear Mixed Model Elastic Net

lmmlasso

Linear mixedeffects models with Lasso

lmtest

Testing Linear Regression Models

locfit

Local Regression

loo

Efficient LeaveOneOut CrossValidation and WAIC for Bayesian Models

lpSolve

Interface to 'Lp_solve' v. 5.5 to Solve Linear/Integer Programs

lsgl

Linear Multiple Output Sparse Group Lasso

lsmeans

LeastSquares Means

ltsa

Linear Time Series Analysis

lubridate

Make Dealing with Dates a Little Easier

magic

Create and Investigate Magic Squares

magrittr

A ForwardPipe Operator for R

MAIT

Statistical Analysis of Metabolomic Data

MALDIquant

Quantitative Analysis of Mass Spectrometry Data

manipulate

Interactive Plots for RStudio

manipulateWidget

Add Even More Interactivity to Interactive Charts

mapdata

Extra Map Databases

mapedit

Interactive Editing of Spatial Data in R

mapproj

Map Projections

maps

Draw Geographical Maps

maptools

Tools for Reading and Handling Spatial Objects

mapview

Interactive Viewing of Spatial Data in R

markdown

'Markdown' Rendering for R

MARSS

Multivariate Autoregressive StateSpace Modeling

MASS

Support Functions and Datasets for Venables and Ripley's MASS

MassSpecWavelet

Mass spectrum processing by waveletbased algorithms

Matrix

Sparse and Dense Matrix Classes and Methods

matrixcalc

Collection of functions for matrix calculations

MatrixModels

Modelling with Sparse And Dense Matrices

matrixStats

Functions that Apply to Rows and Columns of Matrices (and to Vectors)

MaxentVariableSelection

Selecting the Best Set of Relevant Environmental Variables along with the Optimal Regularization Multiplier for Maxent Niche Modeling

mclust

Gaussian Mixture Modelling for ModelBased Clustering

mcmc

Markov Chain Monte Carlo

MCMCpack

Markov Chain Monte Carlo (MCMC) Package

mcmcplots

Create Plots from MCMC Output

mda

Mixture and Flexible Discriminant Analysis

mdatools

Multivariate Data Analysis for Chemometrics

memoise

Memoisation of Functions

memuse

Memory Estimation Utilities

MESS

Miscellaneous Esoteric Statistical Scripts

metabolomics

Analysis of Metabolomics Data

MetaboSignal

MetaboSignal: a networkbased approach to overlay and explore metabolic and signaling KEGG pathways

metap

MetaAnalysis of Significance Values

methylKit

DNA methylation analysis from highthroughput bisulfite sequencing results

methylumi

Handle Illumina methylation data

Metrics

Evaluation Metrics for Machine Learning

mgcv

Mixed GAM Computation Vehicle with Automatic Smoothness Estimation

mice

Multivariate Imputation by Chained Equations

micropan

Microbial PanGenome Analysis

microseq

Basic Biological Sequence Handling

mime

Map Filenames to MIME Types

minfi

Analyze Illumina Infinium DNA methylation arrays

miniUI

Shiny UI Widgets for Small Screens

minpack.lm

R Interface to the LevenbergMarquardt Nonlinear LeastSquares Algorithm Found in MINPACK

minqa

Derivativefree optimization algorithms by quadratic approximation

mirt

Multidimensional Item Response Theory

misc3d

Miscellaneous 3D Plots

miscTools

Miscellaneous Tools and Utilities

missForest

Nonparametric Missing Value Imputation using Random Forest

mitml

Tools for Multiple Imputation in Multilevel Modeling

mitools

Tools for multiple imputation of missing data

mixOmics

Omics Data Integration Project

mixtools

Tools for Analyzing Finite Mixture Models

mlbench

Machine Learning Benchmark Problems

mnormt

The Multivariate Normal and t Distributions

ModelMetrics

Rapid Calculation of Model Metrics

modelr

Modelling Functions that Work with the Pipe

modeltools

Tools and Classes for Statistical Models

mpm

Multivariate Projection Methods

mpoly

Symbolic Computation and More with Multivariate Polynomials

msm

MultiState Markov and Hidden Markov Models in Continuous Time

MSnbase

Base Functions and Classes for Mass Spectrometry and Proteomics

MTS

AllPurpose Toolkit for Analyzing Multivariate Time Series (MTS) and Estimating Multivariate Volatility Models

multcomp

Simultaneous Inference in General Parametric Models

multispatialCCM

Multispatial Convergent Cross Mapping

multiwayvcov

MultiWay Standard Error Clustering

multtest

Resamplingbased multiple hypothesis testing

munsell

Utilities for Using Munsell Colours

mvtnorm

Multivariate Normal and t Distributions

MWASTools

MWASTools: an integrated pipeline to perform metabolomewide association studies

mygene

Access MyGene.Info_ services

mzID

An mzIdentML parser for R

mzR

parser for netCDF

NADA

Nondetects and Data Analysis for Environmental Data

natserv

'NatureServe' Interface

ncbit

retrieve and build NBCI taxonomic data

ncvreg

Regularization Paths for SCAD and MCP Penalized Regression Models

neldermead

R Port of the 'Scilab' Neldermead Module

network

Classes for Relational Data

neuralnet

Training of Neural Networks

nleqslv

Solve Systems of Nonlinear Equations

nlme

Linear and Nonlinear Mixed Effects Models

nloptr

R interface to NLopt

NLP

Natural Language Processing Infrastructure

NMF

Algorithms and Framework for Nonnegative Matrix Factorization (NMF)

nnet

FeedForward Neural Networks and Multinomial LogLinear Models

NOISeq

Exploratory analysis and differential expression for RNAseq data

nor1mix

Normal (1d) Mixture Models (S3 Classes and Methods)

np

Nonparametric Kernel Smoothing Methods for Mixed Data Types

numDeriv

Accurate Numerical Derivatives

oligo

Preprocessing tools for oligonucleotide arrays

oligoClasses

Classes for highthroughput arrays supported by oligo and crlmm

openNLP

Apache OpenNLP Tools Interface

openNLPdata

Apache OpenNLP Jars and Basic English Language Models

openssl

Toolkit for Encryption

openxlsx

Read

optextras

Tools to Support Optimization Possibly with Bounds and Masks

optimbase

R port of the Scilab optimbase module

optimsimplex

R Port of the 'Scilab' Optimsimplex Module

optimx

A Replacement and Extension of the optim() Function

optparse

Command Line Option Parser

ordinal

Regression Models for Ordinal Data

ordinationDuality

Performs orthogonal decomposition

OrganismDbi

Software to enable the smooth interfacing of different database packages

org.Hs.eg.db

Genome wide annotation for Human

orthopolynom

Collection of functions for orthogonal and orthonormal polynomials

packrat

A Dependency Management System for Projects and their R Package Dependencies

pamr

Pam: prediction analysis for microarrays

pan

Multiple Imputation for Multivariate Panel or Clustered Data

parallelDist

Parallel Distance Matrix Computation using Multiple Threads

partitions

Additive Partitions of Integers

pbapply

Adding Progress Bar to '*apply' Functions

pbdZMQ

Programming with Big Data  Interface to 'ZeroMQ'

pbivnorm

Vectorized Bivariate Normal CDF

pbkrtest

Parametric Bootstrap and Kenward Roger Based Methods for Mixed Model Comparison

pbmcapply

Tracking the Progress of Mc*pply with Progress Bar

pcalg

Methods for Graphical Models and Causal Inference

pcaMethods

A collection of PCA methods

pcaPP

Robust PCA by Projection Pursuit

pegas

Population and Evolutionary Genetics Analysis System

penalized

L1 (Lasso and Fused Lasso) and L2 (Ridge) Penalized Estimation in GLMs and in the Cox Model

PerformanceAnalytics

Econometric Tools for Performance and Risk Analysis

permute

Functions for Generating Restricted Permutations of Data

phangorn

Phylogenetic Reconstruction and Analysis

pheatmap

Pretty Heatmaps

phylobase

Base Package for Phylogenetic Structures and Comparative Data

phylolm

Phylogenetic Linear Regression

phylomap

Phylogenetic Stochastic Mapping

phyloseq

Handling and analysis of highthroughput microbiome census data

phytools

Phylogenetic Tools for Comparative Biology (and Other Things)

picasso

Pathwise Calibrated Sparse Shooting Algorithm

pillar

Coloured Formatting for Columns

pinfsc50

Sequence ('FASTA')

pixmap

Bitmap Images (``Pixel Maps)

pkgconfig

Private Configuration for 'R' Packages

pkgmaker

Development Utilities for R Packages

PKI

Public Key Infrastucture for R Based on the X.509 Standard

plogr

The 'plog' C++ Logging Library

plot3D

Plotting MultiDimensional Data

plotly

Create Interactive Web Graphics via 'plotly.js'

plotmo

Plot a Model's Residuals

plotrix

Various Plotting Functions

pls

Partial Least Squares and Principal Component Regression

plsgenomics

PLS Analyses for Genomics

plsRglm

Partial Least Squares Regression for Generalized Linear Models

plyr

Tools for Splitting

png

Read and write PNG images

polynom

A Collection of Functions to Implement a Class for Univariate Polynomial Manipulations

PopGenome

An Efficient Swiss Army Knife for Population Genomic Analyses

pophelper

Tabulate

poRe

An R package to enable organisation and visualisation of nanopore sequencing data

poweRlaw

Analysis of Heavy Tailed Distributions

ppcor

Partial and SemiPartial (Part) Correlation

prabclus

Functions for Clustering of PresenceAbsence

pracma

Practical Numerical Math Functions

praise

Praise Users

preprocessCore

A collection of preprocessing functions

PresenceAbsence

PresenceAbsence Model Evaluation.

prettyunits

Pretty

pROC

Display and Analyze ROC Curves

processx

Execute and Control System Processes

prodlim

ProductLimit Estimation for Censored Event History Analysis

progress

Terminal Progress Bars

proj4

A simple interface to the PROJ.4 cartographic projections library

promises

Abstractions for PromiseBased Asynchronous Programming

propr

Calculating Proportionality Between Vectors of Compositional Data

ProtGenerics

S4 generic functions for Bioconductor proteomics infrastructure

proto

Prototype ObjectBased Programming

proxy

Distance and Similarity Measures

pryr

Tools for Computing on the Language

pscl

Political Science Computational Laboratory

psych

Procedures for Psychological

purrr

Functional Programming Tools

purrrlyr

Tools at the Intersection of 'purrr' and 'dplyr'

qdap

Bridging the Gap Between Qualitative Data and Quantitative Analysis

qdapDictionaries

Dictionaries and Word Lists for the 'qdap' Package

qdapRegex

Regular Expression Removal

qdapTools

Tools for the 'qdap' Package

qpcR

Modelling and Analysis of RealTime PCR Data

qqman

QQ and Manhattan Plots for GWAS Data

qtl

Tools for Analyzing QTL Experiments

quadprog

Functions to solve Quadratic Programming Problems.

quantmod

Quantitative Financial Modelling Framework

quantreg

Quantile Regression

questionr

Functions to Make Surveys Processing Easier

qvalue

Qvalue estimation for false discovery rate control

R2admb

'ADMB' to R Interface Functions

R2GUESS

Wrapper Functions for GUESS

R2HTML

HTML Exportation for R Objects

R2jags

Using R to Run 'JAGS'

R2WinBUGS

Running 'WinBUGS' and 'OpenBUGS' from 'R' / 'SPLUS'

R6

Classes with Reference Semantics

radiator

RADseq Data Exploration

RandomFields

Simulation and Analysis of Random Fields

RandomFieldsUtils

Utilities for the Simulation and Analysis of Random Fields

randomForest

Breiman and Cutler's Random Forests for Classification and Regression

randomForestSRC

Random Forests for Survival

randtoolbox

Toolbox for Pseudo and Quasi Random Number Generation and RNG Tests

ranger

A Fast Implementation of Random Forests

RANN

Fast Nearest Neighbour Search (Wraps ANN Library) Using L2 Metric

rARPACK

Solvers for Large Scale Eigenvalue and SVD Problems

raster

Geographic Data Analysis and Modeling

rasterVis

Visualization Methods for Raster Data

R.basic

[R] Class Library  Standalone basic functions [DEPRECATED]

RBGL

An interface to the BOOST graph library

Rcgmin

Conjugate Gradient Minimization of Nonlinear Functions

RColorBrewer

ColorBrewer Palettes

Rcpp

Seamless R and C++ Integration

RcppArmadillo

'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library

RcppEigen

'Rcpp' Integration for the 'Eigen' Templated Linear Algebra Library

RcppGSL

'Rcpp' Integration for 'GNU GSL' Vectors and Matrices

RcppParallel

Parallel Programming Tools for 'Rcpp'

RcppProgress

An Interruptible Progress Bar with OpenMP Support for C++ in R Packages

RcppRoll

Efficient Rolling / Windowed Operations

RcppZiggurat

'Rcpp' Integration of Different "Ziggurat" Normal RNG Implementations

RCurl

General Network (HTTP/FTP/...) Client Interface for R

rda

Shrunken Centroids Regularized Discriminant Analysis

R.devices

Unified Handling of Graphics Devices

readr

Read Rectangular Text Data

readxl

Read Excel Files

recipes

Preprocessing Tools to Create Design Matrices

registry

Infrastructure for R Package Registries

regress

Gaussian Linear Models with Linear Covariance Structure

rematch

Match Regular Expressions with a Nicer 'API'

rentrez

'Entrez' in R

reports

Assist the Workflow of Writing Academic Articles and Other Reports

repr

Serializable Representations

reprex

Prepare Reproducible Example Code via the Clipboard

reshape

Flexibly Reshape Data

reshape2

Flexibly Reshape Data: A Reboot of the Reshape Package

ResourceSelection

Resource Selection (Probability) Functions for UseAvailability Data

reticulate

Interface to 'Python'

rex

Friendly Regular Expressions

rexpokit

R Wrappers for EXPOKIT; Other Matrix Functions

rgdal

Bindings for the 'Geospatial' Data Abstraction Library

rgeos

Interface to Geometry Engine  Open Source ('GEOS')

rgl

3D Visualization Using OpenGL

Rgraphviz

Provides plotting capabilities for R graph objects

rhdf5

HDF5 interface to R

rhierbaps

rhierbaps

RhpcBLASctl

Control the Number of Threads on 'BLAS'

Rhtslib

HTSlib highthroughput sequencing library as an R package

RInside

C++ Classes to Embed R in C++ Applications

rio

A SwissArmy Knife for Data I/O

ritis

Integrated Taxonomic Information System Client

rjags

Bayesian Graphical Models using MCMC

rJava

LowLevel R to Java Interface

rjson

JSON for R

RJSONIO

Serialize R objects to JSON

rlang

Functions for Base Types and Core R and 'Tidyverse' Features

rlas

Read and Write 'las' and 'laz' Binary File Formats Used for Remote Sensing Data

rlecuyer

R Interface to RNG with Multiple Streams

rmarkdown

Dynamic Documents for R

R.methodsS3

S3 Methods Simplified

Rmisc

Rmisc: Ryan Miscellaneous

RMTstat

Distributions

RMySQL

Database Interface and 'MySQL' Driver for R

RnBeads

RnBeads

rncl

An Interface to the Nexus Class Library

RNeXML

Semantically Rich I/O for the 'NeXML' Format

rngtools

Utility Functions for Working with Random Number Generators

rngWELL

Toolbox for WELL Random Number Generators

robust

Port of the S+ "Robust Library"

robustbase

Basic Robust Statistics

ROC

utilities for ROC

ROCR

Visualizing the Performance of Scoring Classifiers

R.oo

R ObjectOriented Programming with or without References

rotl

Interface to the 'Open Tree of Life' API

roxygen2

InLine Documentation for R

rpart

Recursive Partitioning and Regression Trees

RPMM

Recursively Partitioned Mixture Model

RPostgreSQL

R Interface to the 'PostgreSQL' Database System

rprojroot

Finding Files in Project Subdirectories

rrBLUP

Ridge Regression and Other Kernels for Genomic Selection

rrcov

Scalable Robust Estimators with High Breakdown Point

rredlist

'IUCN' Red List Client

rrpack

ReducedRank Regression

Rsamtools

Binary alignment (BAM)

rsconnect

Deployment Interface for R Markdown Documents and Shiny Applications

RSkittleBrewer

Fun with R Colors

rslurm

Submit R Calculations to a Slurm Cluster

rsm

ResponseSurface Analysis

Rsolnp

General NonLinear Optimization

RSpectra

Solvers for LargeScale Eigenvalue and SVD Problems

RSQLite

'SQLite' Interface for R

rstan

R Interface to Stan

rstanarm

Bayesian Applied Regression Modeling via Stan

rstantools

Tools for Developing R Packages Interfacing with 'Stan'

rstudioapi

Safely Access the RStudio API

Rsubread

Subread sequence alignment for R

rtracklayer

R interface to genome annotation files and the UCSC genome browser

Rtsne

TDistributed Stochastic Neighbor Embedding using a BarnesHut Implementation

RUnit

R Unit Test Framework

R.utils

Various Programming Utilities

ruv

Detect and Remove Unwanted Variation using Negative Controls

rvcheck

R/Package Version Check

rversions

Query 'R' Versions

rvest

Easily Harvest (Scrape) Web Pages

Rvmmin

Variable Metric Nonlinear Function Minimization

rworldmap

Mapping Global Data

S4Vectors

S4 implementation of vectorlike and listlike objects

SALES

Elastic Net and (Adaptive) Lasso Penalized Sparse Asymmetric Least Squares (SALES) and Coupled Sparse Asymmetric Least Squares (COSALES) using Coordinate Descent and Proximal Gradient Algorithms

samr

SAM: Significance Analysis of Microarrays

sandwich

Robust Covariance Matrix Estimators

satellite

Handling and Manipulating Remote Sensing Data

scales

Scale Functions for Visualization

scatterplot3d

3D Scatter Plot

scoringRules

Scoring Rules for Parametric and Simulated Distribution Forecasts

SDMTools

Species Distribution Modelling Tools: Tools for processing data associated with species distribution modelling exercises

seegSDM

Streamlined Functions for Species Distribution Modelling in the SEEG Research Group

segmented

Regression Models with BreakPoints / ChangePoints Estimation

selectr

Translate CSS Selectors to XPath Expressions

sensitivity

Global Sensitivity Analysis of Model Outputs

seqinr

Biological Sequences Retrieval and Analysis

setRNG

Set (Normal) Random Number Generator and Seed

settings

Software Option Settings Manager for R

Seurat

Tools for Single Cell Genomics

sf

Simple Features for R

sfsmisc

Utilities from 'Seminar fuer Statistik' ETH Zurich

sglOptim

Generic Sparse Group Lasso Solver

shape

Functions for Plotting Graphical Shapes

shiny

Web Application Framework for R

shinyjs

Easily Improve the User Experience of Your Shiny Apps in Seconds

shinystan

Interactive Visual and Numerical Diagnostics and Posterior Analysis for Bayesian Models

shinythemes

Themes for Shiny

ShortRead

FASTQ input and manipulation

siggenes

Multiple testing using SAM and Efron's empirical Bayes approaches

SimCorMultRes

Simulates Correlated Multinomial Responses

SKAT

SNPSet (Sequence) Kernel Association Test

slam

Sparse Lightweight Arrays and Matrices

sleuth

Tools for investigating RNASeq

sn

The SkewNormal and Related Distributions Such as the Skewt

sna

Tools for Social Network Analysis

snow

Simple Network of Workstations

snowfall

Easier cluster computing (based on snow).

snpReady

Preparing Genotypic Datasets in Order to Run Genomic Analysis

SNPRelate

Parallel Computing Toolset for Relatedness and Principal Component Analysis of SNP Data

snpStats

SnpMatrix and XSnpMatrix classes and methods

solrium

General Purpose R Interface to 'Solr'

sommer

Solving Mixed Model Equations in R

sourcetools

Tools for Reading

sp

Classes and Methods for Spatial Data

spacetime

Classes and Methods for SpatioTemporal Data

spam

SPArse Matrix

sparsebn

Learning Sparse Bayesian Networks from HighDimensional Data

sparsebnUtils

Utilities for Learning Sparse Bayesian Networks

SparseM

Sparse Linear Algebra

sparsevar

A Package for Sparse VAR/VECM Estimation

spatial

Functions for Kriging and Point Pattern Analysis

SpatioTemporal

SpatioTemporal Model Estimation

spData

Datasets for Spatial Analysis

spDataLarge

Large datasets for spatial analysis

spdep

Spatial Dependence: Weighting Schemes

speedglm

Fitting Linear and Generalized Linear Models to Large Data Sets

SpiecEasi

Sparse Inverse Covariance for Ecological Statistical Inference

splancs

Spatial and SpaceTime Point Pattern Analysis

splitstackshape

Stack and Reshape Datasets After Splitting Concatenated Values

spls

Sparse Partial Least Squares (SPLS) Regression and Classification

sqldf

Manipulate R Data Frames Using SQL

SQUAREM

Squared Extrapolation Methods for Accelerating EMLike Monotone Algorithms

stabledist

Stable Distribution Functions

StanHeaders

C++ Header Files for Stan

statip

Statistical Functions for Probability Distributions

statmod

Statistical Modeling

statnet.common

Common R Scripts and Utilities Used by the Statnet Project Software

stringdist

Approximate String Matching and String Distance Functions

stringi

Character String Processing Facilities

stringr

Simple

strucchange

Testing

subplex

Unconstrained Optimization using the Subplex Algorithm

SummarizedExperiment

SummarizedExperiment container

survey

Analysis of Complex Survey Samples

survival

Survival Analysis

sva

Surrogate Variable Analysis

svDialogs

'SciViews'  Standard Dialog Boxes for Windows

SVGAnnotation

Tools for postprocessing SVG plots created in R

svglite

An 'SVG' Graphics Device

svGUI

SciViews  Manage GUIs in R

svUnit

SciViews GUI API  Unit testing

symDMatrix

Partitioned Symmetric Matrices

synbreed

Framework for the Analysis of Genomic Prediction Data using R

targetSeqView

View alignments over candidate structural variant loci

tawny

Clean Covariance Matrices Using Random Matrix Theory and Shrinkage Estimators for Portfolio Optimization

tawny.types

Common Types for Tawny

taxize

Taxonomic Information from Around the Web

tclust

Robust Trimmed Clustering

TeachingDemos

Demonstrations for Teaching and Learning

tensorA

Advanced tensors arithmetic with named indices

tensorflow

R Interface to 'TensorFlow'

testthat

Unit Testing for R

tfruns

Training Run Tools for 'TensorFlow'

TH.data

TH's Data Archive

threejs

Interactive 3D Scatter Plots

tibble

Simple Data Frames

tidyr

Easily Tidy Data with 'spread()' and 'gather()' Functions

tidyselect

Select from a Set of Strings

tidyverse

Easily Install and Load the 'Tidyverse'

tiff

Read and write TIFF images

timeDate

Rmetrics  Chronological and Calendar Objects

timeSeries

Rmetrics  Financial Time Series Objects

tinytex

Helper Functions to Install and Maintain 'TeX Live'

tm

Text Mining Package

treeio

Base Classes and Functions for Phylogenetic Tree Input and Output

triebeard

'Radix' Trees in 'Rcpp'

trimcluster

Cluster analysis with trimming

truncnorm

Truncated Normal Distribution

tseries

Time Series Analysis and Computational Finance

tseriesChaos

Analysis of nonlinear time series

tsne

TDistributed Stochastic Neighbor Embedding for R (tSNE)

TTR

Technical Trading Rules

twang

Toolkit for Weighting and Analysis of Nonequivalent Groups

TxDb.Hsapiens.UCSC.hg19.knownGene

Annotation package for TxDb object(s)

ucminf

GeneralPurpose Unconstrained NonLinear Optimization

udunits2

Udunits2 Bindings for R

units

Measurement Units for R Vectors

UpSetR

A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets

urca

Unit Root and Cointegration Tests for Time Series Data

urltools

Vectorised Tools for URL Handling and Parsing

uroot

Unit Root Tests for Seasonal Time Series

utf8

Unicode Text Processing

uuid

Tools for generating and handling of UUIDs

V8

Embedded JavaScript Engine for R

VariantAnnotation

Annotation of Genetic Variants

vars

VAR Modelling

varSelRF

Variable Selection using Random Forests

vcd

Visualizing Categorical Data

vcfR

Manipulate and Visualize VCF Data

vegan

Community Ecology Package

VEGAWES

A package to perform vartiationalbased copy number segmentation on WES data

VennDiagram

Generate HighResolution Venn and Euler Plots

venneuler

Venn and Euler Diagrams

VGAM

Vector Generalized Linear and Additive Models

viridis

Default Color Maps from 'matplotlib'

viridisLite

Default Color Maps from 'matplotlib' (Lite Version)

vsn

Variance stabilization and calibration for microarray data

wavelets

A package of functions for computing wavelet filters

waveslim

Basic wavelet routines for one

wavethresh

Wavelets Statistics and Transforms

wbs

Wild Binary Segmentation for Multiple ChangePoint Detection

webshot

Take Screenshots of Web Pages

WGCNA

Weighted Correlation Network Analysis

whisker

{{mustache}} for R

WikidataR

API Client Library for 'Wikidata'

WikipediR

A MediaWiki API Wrapper

wikitaxa

Taxonomic Information from 'Wikipedia'

withr

Run Code 'With' Temporarily Modified Global State

wordcloud

Word Clouds

worrms

World Register of Marine Species (WoRMS) Client

xcms

LC/MS and GC/MS Data Analysis

xgboost

Extreme Gradient Boosting

xlsx

Read

xlsxjars

Package required POI jars for the xlsx package

XML

Tools for Parsing and Generating XML Within R and SPlus

xml2

Parse XML

xtable

Export Tables to LaTeX or HTML

xts

eXtensible Time Series

XVector

Representation and manipulation of external sequences

yaml

Methods to Convert R Data to YAML and Back

zCompositions

Treatment of Zeros and Nondetects in Compositional Data Sets

zeallot

Multiple

zip

CrossPlatform 'zip' Compression

zlibbioc

An R packaged zlib1.2.5

zoo

S3 Infrastructure for Regular and Irregular Time Series (Z's Ordered Observations)

base

The R Base Package

boot

Bootstrap Functions (Originally by Angelo Canty for S)

class

Functions for Classification

cluster

Finding Groups in Data: Cluster Analysis Extended Rousseeuw et al.

codetools

Code Analysis Tools for R

compiler

The R Compiler Package

datasets

The R Datasets Package

foreign

Read Data Stored by 'Minitab'

graphics

The R Graphics Package

grDevices

The R Graphics Devices and Support for Colours and Fonts

grid

The Grid Graphics Package

KernSmooth

Functions for Kernel Smoothing Supporting Wand & Jones (1995)

lattice

Trellis Graphics for R

MASS

Support Functions and Datasets for Venables and Ripley's MASS

Matrix

Sparse and Dense Matrix Classes and Methods

methods

Formal Methods and Classes

mgcv

Mixed GAM Computation Vehicle with Automatic Smoothness Estimation

nlme

Linear and Nonlinear Mixed Effects Models

nnet

FeedForward Neural Networks and Multinomial LogLinear Models

parallel

Support for Parallel computation in R

rpart

Recursive Partitioning and Regression Trees

spatial

Functions for Kriging and Point Pattern Analysis

splines

Regression Spline Functions and Classes

stats

The R Stats Package

stats4

Statistical Functions using S4 Classes

survival

Survival Analysis

tcltk

Tcl/Tk Interface

tools

Tools for Package Development

utils

The R Utils Package
