QuantiSNP is designed to detect rare or de novo copy number alterations in normal DNA samples.
module spider quantisnp to find out what environment modules are available for this application.
- HPC_QUANTISNP_DIR - installation directory
If you publish research that uses quantisnp you have to cite it as follows:
Colella, S.,* Yau, C.,* Taylor, J.M., Mirza, G., Butler, H., Clouston, P., Basset, A.S., Seller, A., Holmes, C., and Ragoussis, J. QuantiSNP: an Objective Bayes Hidden-Markov Model to detect and accurately map copy number variation using SNP genotyping data. Nucleic Acids Research, 35(6):2013-2025 2007.