Difference between revisions of "QUAST"
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==Required Modules== | ==Required Modules== | ||
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==System Variables== | ==System Variables== | ||
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Revision as of 21:24, 6 December 2019
Description
QUAST performs fast and convenient quality evaluation and comparison of genome assemblies.
QUAST computes a number of well-known metrics, including contig accuracy, number of genes discovered, N50, and others, as well as introducing new ones, like NA50 (see details in the paper andin the manual). A comprehensive analysis results in summary tables (in plain text, tab-separated and LaTeX formats) and colorful plots. The tool also produces web-based reports condensing all information in one easy to navigate file.
QUAST has an intuitive command-line interface and a detailed manual to help users run it and understand its output.
Required Modules
Serial
- gcc/5.2.0
- quast
System Variables
- HPC_QUAST_DIR - installation directory
Citation
If you publish research that uses quast you have to cite it as follows:
QUAST paper is available at Bioinformatics Advance Access http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btt086?ijkey=Kzq9lhMayiqecq9&keytype=ref